Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_N08
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80955-3|AAM97944.1|   95|Caenorhabditis elegans Mlp/crp family ...    41   0.001
U80955-2|AAM97946.1|  181|Caenorhabditis elegans Mlp/crp family ...    41   0.001
U80955-1|AAM97945.1|  113|Caenorhabditis elegans Mlp/crp family ...    41   0.001
Z81048-3|CAB02841.1|  407|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical pr...    29   2.8  

>U80955-3|AAM97944.1|   95|Caenorhabditis elegans Mlp/crp family
           (muscle lim protein/cysteine-rich protein) protein 1,
           isoform a protein.
          Length = 95

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = -1

Query: 773 GRNFGPKGVGFGLGAGTLT 717
           GR FGPKGVGFGLGAG LT
Sbjct: 64  GRKFGPKGVGFGLGAGCLT 82


>U80955-2|AAM97946.1|  181|Caenorhabditis elegans Mlp/crp family
           (muscle lim protein/cysteine-rich protein) protein 1,
           isoform c protein.
          Length = 181

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = -1

Query: 773 GRNFGPKGVGFGLGAGTLT 717
           GR FGPKGVGFGLGAG LT
Sbjct: 132 GRKFGPKGVGFGLGAGCLT 150



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 14/19 (73%), Positives = 18/19 (94%)
 Frame = -1

Query: 770 RNFGPKGVGFGLGAGTLTM 714
           R +GPKG+GFG+GAG+LTM
Sbjct: 65  RRYGPKGIGFGIGAGSLTM 83


>U80955-1|AAM97945.1|  113|Caenorhabditis elegans Mlp/crp family
           (muscle lim protein/cysteine-rich protein) protein 1,
           isoform b protein.
          Length = 113

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = -1

Query: 773 GRNFGPKGVGFGLGAGTLT 717
           GR FGPKGVGFGLGAG LT
Sbjct: 64  GRKFGPKGVGFGLGAGCLT 82


>Z81048-3|CAB02841.1|  407|Caenorhabditis elegans Hypothetical
           protein C41G7.4 protein.
          Length = 407

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +3

Query: 537 NPLVSCKHSINHY*IQFN-KW*DSSIGSSSYVLCRLNSFQATISFSNGSYKVQLYIDFLC 713
           NP+V C  + N    + N K     I SSS+   +  SF   + FSN +      I F C
Sbjct: 116 NPIVPCYENENCPCYKLNQKLQGLQINSSSHPPTKFASFDP-VMFSNSNSTFDRCIGFSC 174

Query: 714 HGQCACTQTETNS 752
              C C    TN+
Sbjct: 175 SEACGCKGNCTNN 187


>Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical
           protein T02D1.3 protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +1

Query: 349 IVLVRYIPSIFLCLFVLKLQYFMKNL*TKGPDTFIIHLYI 468
           I L+  IP++F+ +F+LK+  F++ L TK  D    H+++
Sbjct: 32  IPLIYLIPTVFVIMFILKV--FIRRLLTKKHDLMNPHVFL 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,497,741
Number of Sequences: 27780
Number of extensions: 345426
Number of successful extensions: 579
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)