Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_N07
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0082 + 12059692-12060209,12060484-12060973                       28   5.2  
11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604           27   6.8  
11_02_0125 + 8572035-8572112,8573603-8574016,8574171-8574428,857...    27   6.8  
04_04_1299 + 32450998-32451134,32451575-32452304,32452856-324530...    27   6.8  
06_03_0210 + 17968594-17968713,17968895-17969212,17969307-179698...    27   9.0  
01_05_0514 - 22876264-22878567                                         27   9.0  

>08_02_0082 + 12059692-12060209,12060484-12060973
          Length = 335

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +2

Query: 86  PL*KHCKIAKALSAASWPVLFLHCSSTLWASDLLTPEGSFASATTMFNVPSEFKIADFLK 265
           PL +H     A+SAA    +   C    W S++  P     +    F   ++  +   L+
Sbjct: 33  PLTEHDDAISAMSAAHCNNMQFRCYRGFWISEMWAP--GVVAVHRSFAPRADDVLVASLQ 90

Query: 266 KQSTNFLKALS 298
           K  T +LKAL+
Sbjct: 91  KSGTTWLKALT 101


>11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604
          Length = 259

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
 Frame = -1

Query: 438 VFNCGADNVHLNEDEREKANWYTAECGVETGVST-EVI-NAAKIGKYSKDKAFKKFVLCF 265
           V+N G+    +N +E  +        G   G++  E + NAAK   Y + K   K ++C 
Sbjct: 39  VYNDGSGEDKINLEEMLRHAEPEVPMGSVRGLNNFEALQNAAKEVMYDESKGCNKKIVCE 98

Query: 264 FKKSAILNSDGTLNMVVALAKLPSGVNKSE 175
           F K     S GT    +   K P    K +
Sbjct: 99  FGKVTKKPSKGTKRKKLEKTKKPKDSKKPD 128


>11_02_0125 +
           8572035-8572112,8573603-8574016,8574171-8574428,
           8574781-8574966
          Length = 311

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = -1

Query: 276 VLCFFKKSAILNSDGTLNMVVALAKLPSGVNKSEAQSVLEQCKNKTGQDAADKAFAILQC 97
           ++    K+A+ NS  T+ + + L  LPS       QS LEQCK    Q+ A +     Q 
Sbjct: 74  IMAISNKNAMNNS--TMEVQIFLNDLPSNDFNHIFQS-LEQCKQSIAQECASRGLQPPQY 130

Query: 96  FHKG 85
           +  G
Sbjct: 131 YVAG 134


>04_04_1299 + 32450998-32451134,32451575-32452304,32452856-32453053,
            32453398-32454065,32454555-32454978,32455917-32456009,
            32456101-32456295,32456378-32456470,32456718-32456930,
            32457015-32457104,32457239-32457400
          Length = 1000

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 471  KSVVLICLAFAVFNCGADNVHLNEDEREKANWYTAE 364
            KS+V+ C++   +     NV L  D +   NWY A+
Sbjct: 965  KSIVVECMSKPFYGTNILNVELAVDAKCAQNWYAAK 1000


>06_03_0210 +
           17968594-17968713,17968895-17969212,17969307-17969828,
           17970103-17970384
          Length = 413

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 155 CSSTLWASDLLTPEGSFASATTMFNVP 235
           C S    + LL PEG+FA +T  F+ P
Sbjct: 50  CGSAAGNATLLIPEGTFAVSTVEFSGP 76


>01_05_0514 - 22876264-22878567
          Length = 767

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +2

Query: 101 CKIAKALSAASWPVLFLHCSSTLWASDLLTPEGSFASATTMFNVPSEFKIADFLKKQSTN 280
           C++A  L   S      + S TLW  DL+   G+  S T  + +     +A  L      
Sbjct: 331 CELA-CLGNCSCTAYSYNGSCTLWYGDLINLRGANGSGTDGYRISIRLGVASDLSGTGNT 389

Query: 281 FLKALSLEYFPIFAAFIT-SVLTPV 352
               + L    + AA +T +VL  V
Sbjct: 390 KKMTIGLVVAGVVAAAVTLAVLVAV 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,499,581
Number of Sequences: 37544
Number of extensions: 220284
Number of successful extensions: 607
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)