Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_N05
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...   160   4e-40
L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical pr...    32   0.19 
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical pr...    26   9.4  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score =  160 bits (388), Expect = 4e-40
 Identities = 73/97 (75%), Positives = 85/97 (87%)
 Frame = -3

Query: 338 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 159
           M  A K +K  E+INSRL++VMK+G+Y LGYKQTLK+L  GKAKLVIIA N PPLRKSEI
Sbjct: 1   MAPAAKPQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKSEI 60

Query: 158 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAIT 48
           EYYA+LAKTGVHHY+GNNIELGTACG+ +RVCTLA+T
Sbjct: 61  EYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVT 97


>L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical
           protein ZK686.1 protein.
          Length = 44

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = -3

Query: 281 LVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKN 186
           +VMK+G+Y L Y+Q LK+L    AKLVI  K+
Sbjct: 1   MVMKTGQYVL-YEQKLKSLLNENAKLVINTKH 31


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
            K04H4.2c protein.
          Length = 1446

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 36   SPGXCD-GECA--HSVVFSACCS*FNVVPAVVVNTCLS 140
            S G C  G CA  +S + + CC  +N  P + V TC S
Sbjct: 895  SVGGCSSGYCATGYSCIQNQCCPSYNSAPRISVYTCPS 932


>Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical
           protein K04H4.2b protein.
          Length = 788

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 36  SPGXCD-GECA--HSVVFSACCS*FNVVPAVVVNTCLS 140
           S G C  G CA  +S + + CC  +N  P + V TC S
Sbjct: 237 SVGGCSSGYCATGYSCIQNQCCPSYNSAPRISVYTCPS 274


>Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical
           protein K04H4.2a protein.
          Length = 628

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 36  SPGXCD-GECA--HSVVFSACCS*FNVVPAVVVNTCLS 140
           S G C  G CA  +S + + CC  +N  P + V TC S
Sbjct: 237 SVGGCSSGYCATGYSCIQNQCCPSYNSAPRISVYTCPS 274


>Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical
           protein LLC1.3 protein.
          Length = 495

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 365 GFISIYASKMVAAKKQKKTIESINSRLALV 276
           GF +I     V AKK   ++E+IN+R  L+
Sbjct: 138 GFATIVGPNTVQAKKNDGSVETINARNILI 167


>Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical
           protein F55B12.6 protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 203 PALLCLVEEFSKFACILSNIFPISSP 280
           PAL    EEFSKF  +L  I+P   P
Sbjct: 290 PALNLDSEEFSKFVTLLYAIYPAIDP 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,405,011
Number of Sequences: 27780
Number of extensions: 175382
Number of successful extensions: 415
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)