Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_N02
(676 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047655-7|AAC04404.1| 561|Caenorhabditis elegans Hypothetical ... 33 0.19
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ... 29 2.3
Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z38112-6|CAA86235.2| 870|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z35637-7|CAA84690.2| 870|Caenorhabditis elegans Hypothetical pr... 29 4.0
DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein. 29 4.0
AF016681-15|AAB66168.1| 172|Caenorhabditis elegans Hypothetical... 29 4.0
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 28 5.3
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 28 5.3
>AF047655-7|AAC04404.1| 561|Caenorhabditis elegans Hypothetical
protein C17B7.10 protein.
Length = 561
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 230 FYKIMKLTSGAE-TNVTIKYNKIKSYIVINSKMNIYFEIPKQML*N 96
F ++MK G TNV I YN + + + I ++MNI F + Q L N
Sbjct: 184 FKEVMKRLDGLNSTNVNIFYNALHANVEILNQMNIPFSVENQFLHN 229
>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
protein F52C12.4 protein.
Length = 1635
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 150 NNIRLDFIIFYSNIRFCT*S*FHYF--IKAFYFYIYLLN 260
NN D I+FY N+ C S F +F K F F+++ ++
Sbjct: 337 NNDPADDILFYKNVSICLISRFPFFNSFKRFLFFLHRMS 375
>Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical protein
E03A3.6 protein.
Length = 2089
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +3
Query: 315 MFHINNPIRI---QFVTGIMLSILTQHPVHLFLGSL 413
+ H+ +P ++ Q VT L++LTQH HL+L SL
Sbjct: 1328 LIHLPSPQKLASDQNVTNYSLALLTQHTRHLWLQSL 1363
>Z38112-6|CAA86235.2| 870|Caenorhabditis elegans Hypothetical
protein E03A3.6b protein.
Length = 870
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +3
Query: 315 MFHINNPIRI---QFVTGIMLSILTQHPVHLFLGSL 413
+ H+ +P ++ Q VT L++LTQH HL+L SL
Sbjct: 109 LIHLPSPQKLASDQNVTNYSLALLTQHTRHLWLQSL 144
>Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical protein
E03A3.6 protein.
Length = 2089
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +3
Query: 315 MFHINNPIRI---QFVTGIMLSILTQHPVHLFLGSL 413
+ H+ +P ++ Q VT L++LTQH HL+L SL
Sbjct: 1328 LIHLPSPQKLASDQNVTNYSLALLTQHTRHLWLQSL 1363
>Z35637-7|CAA84690.2| 870|Caenorhabditis elegans Hypothetical
protein E03A3.6b protein.
Length = 870
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +3
Query: 315 MFHINNPIRI---QFVTGIMLSILTQHPVHLFLGSL 413
+ H+ +P ++ Q VT L++LTQH HL+L SL
Sbjct: 109 LIHLPSPQKLASDQNVTNYSLALLTQHTRHLWLQSL 144
>DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.
Length = 2084
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +3
Query: 315 MFHINNPIRI---QFVTGIMLSILTQHPVHLFLGSL 413
+ H+ +P ++ Q VT L++LTQH HL+L SL
Sbjct: 1331 LIHLPSPQKLASDQNVTNYSLALLTQHTRHLWLQSL 1366
>AF016681-15|AAB66168.1| 172|Caenorhabditis elegans Hypothetical
protein F22E5.2 protein.
Length = 172
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 275 TEQVRKSSSPNIFYVSY*QSNPYPICHRNHVVNSYT 382
TE ++ +IFYV+ N YPI +RN ++N +T
Sbjct: 54 TETTMETVETHIFYVTC--KNRYPISNRNCLINRHT 87
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein
363, isoform b protein.
Length = 2692
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 427 LKKSLNSNVLDSILTFIFL 483
+KK+ NS+VLD+ TF+FL
Sbjct: 469 IKKTTNSDVLDNYFTFLFL 487
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein
363, isoform a protein.
Length = 2695
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 427 LKKSLNSNVLDSILTFIFL 483
+KK+ NS+VLD+ TF+FL
Sbjct: 469 IKKTTNSDVLDNYFTFLFL 487
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,632,117
Number of Sequences: 27780
Number of extensions: 201084
Number of successful extensions: 453
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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