Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_M20
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...   123   1e-29
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    29   0.36 
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   1.1  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    27   1.9  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   2.5  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   5.8  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    25   7.7  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   7.7  

>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score =  123 bits (297), Expect = 1e-29
 Identities = 60/112 (53%), Positives = 81/112 (72%)
 Frame = -2

Query: 471 KVEREGRHITXVCAGRGTDTALKAAEQLAGSKGIECEVVNLRTIRPMDFDTIARSIAKTH 292
           KVER G+ IT V       TAL+AA++L    G+E EV+NLR+IRP+D +TIA S+ KT+
Sbjct: 234 KVERPGKDITIVGESISVVTALEAADKLKADYGVEAEVINLRSIRPLDINTIAASVKKTN 293

Query: 291 HLITVEQGWPQSGIGAEICARVMESPSFFELDAPVWRVCGADVPMPYARTLE 136
            ++TV+Q + Q GIG+EI A++MES +F  LDAPV RV  ADVPMPY+  +E
Sbjct: 294 RIVTVDQAYSQHGIGSEIAAQIMESDAFDYLDAPVERVSMADVPMPYSHPVE 345


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -2

Query: 300 KTHHLITVEQGWP---QSGIGAEICARVMESPSFFEL 199
           K H L+  ++GWP   +SG+G ++  +  +   FFE+
Sbjct: 222 KRHVLVQPQEGWPPLVRSGLGMKLTGQSQDLECFFEI 258


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 298 FGNGPSDRVEIHWPYCS*IYYFTFYTL 378
           +G G S  +E ++ YCS I+Y+   TL
Sbjct: 759 YGWGASSEMECYFSYCSLIFYYQATTL 785


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 460 GGSAYHXSVRWTRHRHRAQGR*TTGWKQGYRM 365
           G +A+  S+RW    HRA  R T   K  Y +
Sbjct: 132 GAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNV 163


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 173 PHTRHTGASSSKNDGDSMTRAQISA 247
           PH+RHT   +    G S++R   SA
Sbjct: 45  PHSRHTSTVAGTEGGSSLSRRHTSA 69


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 334  WPYCS*IYYFTFYTLASSQLFSGLER 411
            W Y S  +Y TF+ L+   +F  LER
Sbjct: 969  WDYFSPNFYLTFWKLSLYDVFVPLER 994


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 212 DGDSMTRAQISAPIPDCGHPC 274
           DG + T    ++ I DCGH C
Sbjct: 245 DGQTFTPIDSASRILDCGHDC 265


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 15/80 (18%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = -2

Query: 246 AEICARVMESPSFFELDAPVWRVCGADV--PMPYARTLEXXXXXXXXXXXXXVTNVLGNK 73
           ++I ++++++PS    DAP++  CG D    + +   ++              +N   N 
Sbjct: 545 SKIASKILQNPSLEGKDAPLYS-CGLDSIHSVRFFHAIQSHFHLEGPIRYNMNSNCTPNS 603

Query: 72  ISAVQAQ*XQGISTSKYKLI 13
           I+++  +    +S+  Y+L+
Sbjct: 604 IASIIQKKSYNVSSITYELL 623


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,526,022
Number of Sequences: 5004
Number of extensions: 23459
Number of successful extensions: 75
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)