Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_M18
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    27   1.8  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   2.3  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    27   2.3  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   3.1  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   7.1  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   9.4  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 514 TRPMYKGSPSSVSPPGNAPG-GTLDPLVGTQLFGPPTKIWY 633
           T P    S S + PPGN PG   + P++     G P++  Y
Sbjct: 525 TAPSQPASLSLLGPPGNTPGHRNVPPILKRSSIGTPSQQAY 565


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 517 RPMYKGSPSSVSPPGNAPGGTLDPLVGT 600
           RP+   SPSS S   +A  G ++P VGT
Sbjct: 187 RPVLDRSPSSFSQSRSAVSGNMNPGVGT 214


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 499 LPSWRTRPMYKGSPSSVSPPGNAPGGTLD 585
           LP  RT   Y+ +PSS     NAP  T +
Sbjct: 35  LPQDRTTSTYRATPSSADAGYNAPSSTFE 63


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 426 ESKLLSPKRNVADAVRLLNLAGG 494
           +S LLSP+ N  D V L+++AGG
Sbjct: 318 QSFLLSPEENSLDDVLLVSIAGG 340


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 496  RLPSWRTRPMYKGSPSSVS 552
            R+P+W  R  Y+GSP  +S
Sbjct: 1082 RVPAWCDRICYRGSPDYIS 1100


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 213 NFKVKLKNSHENNPSAFFFAANQKSRY*TCIIMNTSFEISNY 338
           +F +   +SH NNP+   ++ + +S       MNT+  +  Y
Sbjct: 310 SFFIDSLDSHPNNPTGILYSLDSESNTFVIRQMNTNRYVDGY 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,906
Number of Sequences: 5004
Number of extensions: 57366
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)