Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_M18
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745,996...    29   4.2  
03_05_0524 - 25181432-25181483,25181565-25181691,25181776-251818...    28   5.6  
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023...    28   5.6  
10_01_0306 - 3372952-3373929                                           27   9.7  
10_01_0304 - 3356541-3357518                                           27   9.7  
10_01_0302 + 3320730-3321710                                           27   9.7  
01_01_1218 + 9846644-9847837                                           27   9.7  

>03_02_0630 +
           9964593-9964738,9965548-9965603,9965895-9966745,
           9966848-9967046,9967246-9967425,9967591-9967967,
           9968625-9968765
          Length = 649

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 538 ENLYTLAVSATKVASPPARFNSLTASA 458
           EN+ T+  SA+K+A+PPA   S  A++
Sbjct: 231 ENIDTITDSASKIATPPATITSFGAAS 257


>03_05_0524 -
           25181432-25181483,25181565-25181691,25181776-25181826,
           25182159-25182314,25182405-25182905,25182999-25183713,
           25183797-25183867,25183974-25184103,25185706-25186167
          Length = 754

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -2

Query: 596 PTSGSNVPPGA--FPGGETEDGEPLYIGRVRHEGSLTTGKVQ 477
           P  G   PPG   +PG   + G+P  +    H+G+   G  Q
Sbjct: 8   PGRGGGAPPGMTPWPGPPPQPGQPAVVYTALHQGAYQPGVAQ 49


>02_05_0938 +
           32901143-32901215,32901841-32901982,32902243-32902314,
           32902573-32902644,32902711-32902782,32902913-32902948,
           32903001-32903072,32903319-32903387,32903483-32903554,
           32903668-32903739,32903838-32903909,32904153-32904224,
           32904470-32904541,32904623-32904694,32904782-32904853,
           32904911-32905003,32905150-32905218,32905315-32905386,
           32905479-32905552,32905643-32905771,32905966-32906331,
           32906584-32906954,32907522-32907890
          Length = 884

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 559 PVEKLKMENLYTLAVSATKVASP-PARFNSL 470
           P+E  KM+NL TL +S   VA P P+   SL
Sbjct: 311 PIELAKMKNLDTLDLSCNMVAGPIPSAIGSL 341


>10_01_0306 - 3372952-3373929
          Length = 325

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 532 GSPSSVSPPGNAPGGTLDPLVGTQLFGPPTKIW 630
           G P  +  PG  P  + + L G + +GP   +W
Sbjct: 197 GKPYDLCRPGTLPYTSPEQLAGNRCYGPAVDMW 229


>10_01_0304 - 3356541-3357518
          Length = 325

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 532 GSPSSVSPPGNAPGGTLDPLVGTQLFGPPTKIW 630
           G P  +  PG  P  + + L G + +GP   +W
Sbjct: 197 GKPYDLCRPGTLPYTSPEQLAGNRCYGPAVDMW 229


>10_01_0302 + 3320730-3321710
          Length = 326

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 532 GSPSSVSPPGNAPGGTLDPLVGTQLFGPPTKIW 630
           G P  +  PG  P  + + L G + +GP   +W
Sbjct: 198 GKPYDLCRPGTLPYTSPEQLAGNRCYGPAVDMW 230


>01_01_1218 + 9846644-9847837
          Length = 397

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 559 PVEKLKMENLYTLAVSATKVASPPARFNSLTASATFRL 446
           P   +KM++L  LA++ TK+ S PA    L    T  L
Sbjct: 47  PSSIMKMKHLQFLALNNTKIQSLPAEIGQLQTLQTLEL 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,899,913
Number of Sequences: 37544
Number of extensions: 385877
Number of successful extensions: 1061
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)