Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_M16
(742 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 35 0.011
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.1
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 27 2.8
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch... 27 3.7
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 27 3.7
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.9
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 4.9
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.9
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 26 6.5
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.6
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch... 25 8.6
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 25 8.6
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 35.1 bits (77), Expect = 0.011
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = -3
Query: 710 IYLQDINA-LEVIPLVN--WFNCCFAGILDDTSLPKIWDKVCSGAPKILAYAAVMLVITL 540
I + DI A L I LV WF F GIL + ++WD K+L + + ++ L
Sbjct: 476 IPVNDIVAKLPPITLVTAAWFMSAFVGILPTETALRVWDCFFYEGSKVL-FMTALCILRL 534
Query: 539 RRNILKAKNAD-EVLKCVTEIPK 474
+ +K+K+ EV + + ++PK
Sbjct: 535 GEDDIKSKSEQTEVFQVIQDLPK 557
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 211 SPMDFSNARGRAKPLPTGQAA 273
SP D N R RAK +P+G +A
Sbjct: 216 SPSDGQNVRSRAKKIPSGMSA 236
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Frame = +3
Query: 291 LPYIIQKF------TGPLNISLANFPSNEFNPLEGHTSFLRQ 398
L Y++ KF TGPLNI + N S F P + +TSFL Q
Sbjct: 52 LYYLLTKFEELGVNTGPLNIRIENLHSETF-PSD-YTSFLNQ 91
>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 26.6 bits (56), Expect = 3.7
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = -3
Query: 671 LVNWFNCCFAGILDDTSLPKIWDK-VCSGAPKILAYAAVMLVITLRRNILKAKNADEVLK 495
L WF CC IL K + K S P A VI L ++ LK E+ K
Sbjct: 13 LTKWFFCCVCTILTMPFFKKPYRKRGISRTPYEWLTYADKCVIELSKSELKPNEEKELPK 72
Query: 494 CVTEIPKQCEE 462
+ E K EE
Sbjct: 73 DIKEDCKTVEE 83
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Frame = -3
Query: 668 VNWFNCCFAGILDDTSL-PKIWDKVCS 591
V W CCF DD L IW CS
Sbjct: 531 VKWMRCCFEPSSDDYVLQTDIWQLYCS 557
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 418 PNRKATNWRRNDV*PSNGLNSLEGKFANEMLSGP 317
P+ A+N + PSNG N EG A+ SGP
Sbjct: 400 PDLSASNEAEATMPPSNGSNFSEGLSASPFESGP 433
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -3
Query: 671 LVNWFNCCFAGI-LDDTSLPKIWDKVCSGAPKILAYAAVMLVITLRRN-ILKAKNADE 504
L+ +F+ + I LDD L +I + V ++ V+ +T+R N I++ +NA E
Sbjct: 482 LLRYFSPTYGNIYLDDFPLEEIDEHVLGSTITLVCQQPVIFDMTIRENIIMRNENASE 539
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 533 NILKAKNADEVLKCVTEIPKQCEEVVANKAIDLWQYYG-AQPQSDQLAK 390
N+L+++N E+L+ + K C ++A + + Q SD++AK
Sbjct: 142 NVLRSQNNPEILQDMISETKDCRSLIAEQLLQSASLLNDFQNDSDRIAK 190
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 542 LRRNILKAKNADEVLKCVTEIPKQCEEVVANKAID-LWQYYG 420
LR N+ ++AD++ CV + ++ AN + D W Y G
Sbjct: 502 LRFNLPDFQSADDLFVCVEKSVSNFVQITANSSGDFFWPYAG 543
>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 129
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 277 RQRLGR*AAAWLC-PWHC*SPWATVTIHHQVGRMLVCLQR 161
R +L R W C H +PW + + GR+LV QR
Sbjct: 39 RNQLIRVFCVWACIELHSINPWYSGMYTFETGRLLVLKQR 78
>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 568 YAKILGAPLHTLSHI 612
YAK+ G PLH L+H+
Sbjct: 150 YAKVGGIPLHELNHL 164
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 610 IFGKDVSSNIPAKQQLNQFTNGITSNAFISCK*IYNSPS 726
IFG +S ++ + F+ +SN+F + N+PS
Sbjct: 206 IFGAPTTSAFTSQLNASPFSQNTSSNSFTGSNPVQNNPS 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,553
Number of Sequences: 5004
Number of extensions: 63961
Number of successful extensions: 193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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