Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_M16
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0271 - 15156737-15156868,15157134-15157235,15157342-151574... 31 0.96
04_04_1552 - 34355544-34355613,34356099-34356282,34356829-343569... 29 2.9
05_04_0413 - 21063868-21064344,21064416-21064482,21064865-210649... 29 3.9
07_03_1461 - 26700613-26700621,26700784-26700851,26701778-267019... 29 5.1
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132... 29 5.1
01_01_0363 + 2850954-2853675,2853819-2854225 28 6.8
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 28 9.0
>08_02_0271 -
15156737-15156868,15157134-15157235,15157342-15157419,
15157523-15157616,15157736-15157872,15157989-15158105,
15158470-15158940
Length = 376
Score = 31.1 bits (67), Expect = 0.96
Identities = 12/55 (21%), Positives = 29/55 (52%)
Frame = -3
Query: 662 WFNCCFAGILDDTSLPKIWDKVCSGAPKILAYAAVMLVITLRRNILKAKNADEVL 498
WF C F+ L + ++WD + + K+L + A+ + ++L+ ++ +V+
Sbjct: 261 WFLCLFSKTLPSETTLRVWDVLFNEGAKVLFHVALAIFKMREDDLLRIQHIGDVI 315
>04_04_1552 -
34355544-34355613,34356099-34356282,34356829-34356922,
34357006-34357124,34357623-34357689,34359185-34359265,
34359267-34359413
Length = 253
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = -3
Query: 638 ILDDTSLPKIWDKVCSGAPKILAYAAVMLVITLRRNILKAKNADEVLK--CVTEIPKQCE 465
+LD LP+ DK C+G+PK+ + + R + + D+++K + +P Q E
Sbjct: 117 VLDIEGLPQQPDKCCTGSPKMTRALSRKGSNRMERRSGEEQEQDDLVKKLIIKVVPSQLE 176
Query: 464 E----VVANKAI 441
+ +V NKA+
Sbjct: 177 QLKMPLVQNKAL 188
>05_04_0413 -
21063868-21064344,21064416-21064482,21064865-21064948,
21065028-21065158,21065504-21065560,21065818-21065866,
21067357-21067442,21067715-21067792,21067952-21068074,
21068705-21068794,21068796-21068849,21068923-21069020,
21069093-21069160,21069688-21069777,21069870-21070117
Length = 599
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 235 RGRAKPLPTGQAAAYLLLCCRILYKSLQVHL 327
R A P A A LLL C +LY+ L++HL
Sbjct: 16 RAAALVPPAHYALAALLLACALLYRFLELHL 46
>07_03_1461 -
26700613-26700621,26700784-26700851,26701778-26701919,
26702011-26702318,26702415-26702481,26702543-26702664,
26702763-26702815,26702924-26703006,26703092-26703160,
26703235-26703633
Length = 439
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +1
Query: 154 FIAFVGRRAYGPPDGEWLPSP-----MDFSNARGRAKPLPTGQAAAY 279
FIA + R P G P P D S A+GR++P+P+ ++A++
Sbjct: 326 FIAAMLARPSNPESGPGRPQPRTKQHQDASPAQGRSQPMPSDKSASH 372
>03_01_0164 -
1326002-1326409,1326410-1326428,1326523-1326647,
1327482-1327530,1328834-1328855,1328969-1329071
Length = 241
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +3
Query: 264 PSRCLPSIMLPYIIQKFTGPLNISLANFPSNEFNPLEGHTSFLRQLVALRLGSVILPQVN 443
P CL + + +Q+ +I A S E + S L +V + + + ++
Sbjct: 51 PEFCLATEGFMFCLQQIACIFSIVAAIVGSEELSEASQILSCLSDMVYCSVCACMQVNIH 110
Query: 444 RFVGHYLLTLLWNLC 488
G YLLTLL NLC
Sbjct: 111 NIFGDYLLTLL-NLC 124
>01_01_0363 + 2850954-2853675,2853819-2854225
Length = 1042
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 312 FTGPLNISLANFPSNEFNPLEGHTSFLRQLVALRLGSV 425
FTGP+ SLAN S EF L+ + L+ L+ LG++
Sbjct: 169 FTGPIPASLANLSSLEFLKLD--FNHLKGLIPSSLGNI 204
>01_06_1742 -
39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = -3
Query: 593 SGAPKILAYAAVMLVITLRRNILKAKNADEVL----KCVTEIPKQCEEVVANKAIDLWQY 426
+GA K + AVML+ + I + KNA +V+ V + +QCE + + ++ QY
Sbjct: 58 TGAGKTMI--AVMLIKEFGK-INRTKNAGKVIIFLAPTVQLVTQQCEVIEIHTDFEVEQY 114
Query: 425 YGAQ 414
YGA+
Sbjct: 115 YGAK 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,804,919
Number of Sequences: 37544
Number of extensions: 459414
Number of successful extensions: 1113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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