Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_M16
(742 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78542-2|CAB01744.2| 641|Caenorhabditis elegans Hypothetical pr... 36 0.040
Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr... 33 0.16
AF040654-3|AAK21451.2| 445|Caenorhabditis elegans Hypothetical ... 33 0.16
U49830-13|AAK31474.1| 826|Caenorhabditis elegans Hypothetical p... 31 0.86
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr... 29 2.6
U29244-10|AAC71091.2| 908|Caenorhabditis elegans Hypothetical p... 29 3.5
AC024810-16|AAO21412.2| 684|Caenorhabditis elegans Cdt (s. pomb... 28 8.0
AC024810-15|AAF60769.1| 741|Caenorhabditis elegans Cdt (s. pomb... 28 8.0
>Z78542-2|CAB01744.2| 641|Caenorhabditis elegans Hypothetical
protein F20D1.2 protein.
Length = 641
Score = 35.5 bits (78), Expect = 0.040
Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Frame = -3
Query: 740 MLDXQDGELYIYLQDINALEVIPLVNWFNCCFAGILDDTSLPKIWD-KVCSGAPKILAYA 564
+L D ++ +L+ ++ + NWF F+ + S ++W + G P ++ +
Sbjct: 158 LLQYHDPQISNHLESLHCSPSMYTKNWFATLFSSSMSTESCHELWKLYIEQGDPFLVFHL 217
Query: 563 AVMLVITLRRNILKAKNADEVLKCVTEIPKQCEEVVANKAIDLWQ 429
A++ +I + IL+ K DE K V + ++ D +Q
Sbjct: 218 AIVFLINAKDEILQVKR-DEKEKAVQILENMAAQLSVEDVPDFFQ 261
>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical
protein C31E10.8 protein.
Length = 1272
Score = 33.5 bits (73), Expect = 0.16
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Frame = -3
Query: 740 MLDXQDGELYIYLQDINALEVIPLVNWFNCCFAGILDDTSLPKIWDKVCSGAPKILAYAA 561
+L+ Q ++ +L+ ++ +NWF F + +L +IWD PK+L A
Sbjct: 523 LLEVQHPKIMKHLKSLDIDVASFTLNWFISLFFDAVPFNTLLRIWDCFLLEGPKVLFRFA 582
Query: 560 VMLVITLRRNILKAKNADEVLKCVTEIPKQC--EEVVANKA 444
++L+ I+ +A +++ K EE + N A
Sbjct: 583 IVLIGKHEEEIISRGDAIGIMRVSKAATKLAFDEEAIVNMA 623
>AF040654-3|AAK21451.2| 445|Caenorhabditis elegans Hypothetical
protein R06B10.5 protein.
Length = 445
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 671 LVNWFNCCFAGILDDTSLPKIWDK-VCSGAPKILAYAAVML 552
++ WF CCF L ++ ++WD +C G + A V+L
Sbjct: 339 MIEWFMCCFCRTLPWPTVLRVWDMFLCEGVKILFKVALVLL 379
>U49830-13|AAK31474.1| 826|Caenorhabditis elegans Hypothetical
protein C33F10.2 protein.
Length = 826
Score = 31.1 bits (67), Expect = 0.86
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = -3
Query: 725 DGELYIYLQDINALEV-IPLVNWFNCCFAGILDDTSLPKIWDKVCSGAPKILAYAAVMLV 549
D LY +L+ IN + + + WF CFA L + L +WD+ A+ ++
Sbjct: 588 DPVLYKHLK-INGFDAELFAIPWFLTCFAHELPLSKLVLLWDETMMHGNAFPLMIALAML 646
Query: 548 ITLRRNILKAKNADEVLKCVTEIPK-QCEEVVAN 450
LR +L A N +E++ + + P +E++ N
Sbjct: 647 NRLRDKLL-AVNFNEMIIIIHDQPDLSIDEIIKN 679
>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical protein
F28B4.3 protein.
Length = 2229
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 276 LPSIMLPYIIQKFTGPLNISLANFPSNEFNPLEGHTSFLRQLVALRLGSV 425
LPS+ I+Q TGP N S + F P++ +T+F+ + GS+
Sbjct: 1733 LPSLYGASILQDPTGPANYSCTDGSLPWFVPVDSNTTFIYVTTSSEFGSL 1782
>U29244-10|AAC71091.2| 908|Caenorhabditis elegans Hypothetical
protein ZK1248.10 protein.
Length = 908
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = -3
Query: 695 INALEV---IPLVNWFNCCFAGILDDTSLPKIWDKVCSGAPKILAYAAVMLVITLRRNIL 525
+ ALEV + ++WF CF +L + I+D K+L A+ L ++L
Sbjct: 790 LRALEVDLSLFALSWFLTCFVDVLPHSIYLTIFDAFLYEGNKVLFRFALALFKICEPHVL 849
Query: 524 KAKNADEVLKCVTE 483
+ K V +C+++
Sbjct: 850 QCKTIGTVHQCLSK 863
>AC024810-16|AAO21412.2| 684|Caenorhabditis elegans Cdt (s. pombe
licensing factor)homolog protein 1, isoform b protein.
Length = 684
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 599 LCPISSVKMYHPIFQQSSS*TSSPMVLLP 685
LC S++K HP+F+ S P V LP
Sbjct: 429 LCASSNIKRMHPLFRLDKHCPSLPQVKLP 457
>AC024810-15|AAF60769.1| 741|Caenorhabditis elegans Cdt (s. pombe
licensing factor)homolog protein 1, isoform a protein.
Length = 741
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 599 LCPISSVKMYHPIFQQSSS*TSSPMVLLP 685
LC S++K HP+F+ S P V LP
Sbjct: 429 LCASSNIKRMHPLFRLDKHCPSLPQVKLP 457
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,398,079
Number of Sequences: 27780
Number of extensions: 370932
Number of successful extensions: 1012
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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