Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_M09
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67949-1|AAL06028.2|  633|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>U67949-1|AAL06028.2|  633|Caenorhabditis elegans Hypothetical
           protein F55A4.10 protein.
          Length = 633

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 442 HTKSHSVITSGDESGRSSREKRVRNYVSVSFTTCQRPHRSLENNESV 582
           H ++    TS + S  SS   + R  +SV  +T +  H+S EN+ES+
Sbjct: 148 HPEAEIRTTSSNSSDLSSSISQSRASLSVDESTKESMHQSFENSESI 194


>Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical
           protein T28A8.7 protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 516 VPHPLLSATSTALVSRCNNRMAFSVYVASR--RCDRTVYVVSESVAA 382
           +  P+ SAT+    +R  +R  FSV++  R  RCD   + + E + A
Sbjct: 240 ISKPIASATAAIAQNRKTSRSFFSVFINGRSVRCDILKHPIDEVLGA 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,498,685
Number of Sequences: 27780
Number of extensions: 270001
Number of successful extensions: 731
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)