Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_M07
(397 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 154 4e-39
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 153 7e-39
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 32 0.037
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 31 0.065
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 0.80
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 25 4.3
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 5.6
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 5.6
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 5.6
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 5.6
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 25 5.6
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 24 7.4
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 24 7.4
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 24 9.8
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr... 24 9.8
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 24 9.8
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 154 bits (374), Expect = 4e-39
Identities = 70/113 (61%), Positives = 88/113 (77%)
Frame = -1
Query: 355 MDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 176
+ V +L+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E
Sbjct: 30 LSVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 89
Query: 175 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 17
Q PLVKV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL L
Sbjct: 90 SQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 153 bits (372), Expect = 7e-39
Identities = 69/113 (61%), Positives = 88/113 (77%)
Frame = -1
Query: 355 MDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 176
+ V AL+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E
Sbjct: 27 VSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 86
Query: 175 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 17
+ PL+KV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL L
Sbjct: 87 SETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQKL 139
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 31.9 bits (69), Expect = 0.037
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = -1
Query: 349 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 170
+N + + +K A ++ G+ E KA+ K + L +LA + + LC ++
Sbjct: 37 LNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNN 96
Query: 169 IPLVKVDNNKKLGE 128
+P + + + LGE
Sbjct: 97 VPYLYTVSKELLGE 110
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 31.1 bits (67), Expect = 0.065
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = -1
Query: 292 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 131
+GL+ ++ ++A L ++A + D + ALC + +P V N +LG
Sbjct: 134 YGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 27.5 bits (58), Expect = 0.80
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 8 SSLXHIQRWSFLAEIFDDNTGAADNFPCLAIL 103
S L RW +LA +F N A N P + +L
Sbjct: 250 SLLLSDDRWEYLASLFTSNFTAVHNIPSVPLL 281
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.0 bits (52), Expect = 4.3
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 61 QHRSSRQFSLPCHPCQSCRD-QPILQAF 141
+ ++ +QF LP PCQ+ + +PI+++F
Sbjct: 226 KRKALKQFPLPPDPCQALANLRPIVKSF 253
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 5.6
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 205 CMQLHHSSQPKHIVLLASCQEL*RLREDRAQDHHGLKLSLAPLAVLHSRPCCYPT 369
C+ S +HIV A L +D +DH G+ L ++P V + P+
Sbjct: 517 CVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPS 571
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 24.6 bits (51), Expect = 5.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = +1
Query: 331 LAVLHSRPCCYPTRWGWWGNSF 396
LA + + +P WGWW ++
Sbjct: 61 LAGISNEHPAHPQNWGWWKKAY 82
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 24.6 bits (51), Expect = 5.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 298 DHHGLKLSLAPLAVLHSRPC 357
D GL ++ L+++HSRPC
Sbjct: 529 DEMGLGKTIEVLSLIHSRPC 548
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 5.6
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 205 CMQLHHSSQPKHIVLLASCQEL*RLREDRAQDHHGLKLSLAPLAVLHSRPCCYPT 369
C+ S +HIV A L +D +DH G+ L ++P V + P+
Sbjct: 517 CVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPS 571
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehyd
rogenase/methylenetetrahydrofolatecyclohydrolase/formyl
tetrahydrofolatesynthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 5.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 87 GKLSAAPVLSSKISARKLQR 28
G S+A +L+ K+ ARKLQR
Sbjct: 28 GTSSSANILNGKLLARKLQR 47
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 24.2 bits (50), Expect = 7.4
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -1
Query: 313 LIHGGLVHGLHEAAKALDKRQAVLCVLAEN-CDE 215
L+H GL+H L + K +LA N CDE
Sbjct: 896 LLHSGLIHNLLLSLKKFGSSSLRTFLLAMNTCDE 929
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 198 LFRLCATNIRFHLSRLTTTKSLEN 127
L L +T+ FHL L T +EN
Sbjct: 5 LLHLASTHAHFHLPELETLAKIEN 28
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 160 VKVDNNKKLGEWAGLCKIDKDGKARKIVG 74
V+ +N +K EWAGL ID + VG
Sbjct: 527 VRKENKRKAQEWAGL-TIDDEADLLVFVG 554
>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 251
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 384 PPTPSCRVTTWT*M*HC 334
PPTPSC T M HC
Sbjct: 133 PPTPSCLKYTLLYMPHC 149
>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 236 NT*YCLPLVKSFSGFVKTVHKT 301
N YCLP +F FVK + +T
Sbjct: 90 NRLYCLPFCNAFIEFVKKLTET 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,718,498
Number of Sequences: 5004
Number of extensions: 32116
Number of successful extensions: 125
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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