Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_M04
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 120 9e-28
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 120 9e-28
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 31 1.2
11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415 30 2.1
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 29 4.9
02_01_0475 + 3422629-3422695,3422960-3423216 28 6.4
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 28 8.5
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 120 bits (290), Expect = 9e-28
Identities = 62/115 (53%), Positives = 72/115 (62%)
Frame = -1
Query: 717 YXRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXX 538
Y I GD ++ AAYSHELPRYG++VGLTNYAAAY TG
Sbjct: 64 YATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEA 123
Query: 537 XXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 373
++Y VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF
Sbjct: 124 TGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRF 177
Score = 105 bits (252), Expect = 4e-23
Identities = 47/113 (41%), Positives = 76/113 (67%), Gaps = 2/113 (1%)
Frame = -2
Query: 389 IPSKDS--PGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 216
IP D G+ + K+ ++++HR +I+G HVA+YMRS+ +++ + F+ FS+Y+K G+
Sbjct: 170 IPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGID 229
Query: 215 ADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 57
AD +EA+YKK H AIRADP+ K KK+ KR+N +KLT +RK + ++
Sbjct: 230 ADGMEALYKKVHAAIRADPT-MAKSTKKEPATHKRYNLKKLTYEQRKASLVER 281
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 120 bits (290), Expect = 9e-28
Identities = 62/115 (53%), Positives = 72/115 (62%)
Frame = -1
Query: 717 YXRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXX 538
Y I GD ++ AAYSHELPRYG++VGLTNYAAAY TG
Sbjct: 64 YATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEA 123
Query: 537 XXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 373
++Y VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF
Sbjct: 124 TGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRF 177
Score = 104 bits (249), Expect = 8e-23
Identities = 46/113 (40%), Positives = 76/113 (67%), Gaps = 2/113 (1%)
Frame = -2
Query: 389 IPSKDS--PGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 216
IP D G+ + K+ ++++HR +I+G HVA+YMRS+ +++ + F+ FS+Y+K G+
Sbjct: 170 IPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGID 229
Query: 215 ADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 57
AD +E++YKK H AIRADP+ K KK+ KR+N +KLT +RK + ++
Sbjct: 230 ADGMESLYKKVHAAIRADPT-MAKSTKKEPATHKRYNLKKLTYEQRKASLVER 281
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -2
Query: 152 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 54
KKK+ KK K+K+ NK+K ++K + K+KK
Sbjct: 74 KKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKK 106
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 197 IYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKA 51
+ KK + + KKK+ KK + K+K+ K+K ++K R KA
Sbjct: 66 VMKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKRWPSNKA 114
>11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415
Length = 126
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -2
Query: 206 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 54
+E KKA ++ P KKK+ KK K+K+ K+K E ++ ++Q+K
Sbjct: 40 LELRKKKAKAKVKKKP--KKKKNKKAKKKKKKKKKKKKEEEEEESDVRQQK 88
>02_01_0598 +
4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -2
Query: 227 LGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNK 102
LG++ A+EA YK+++E+ A+P KK + +W++
Sbjct: 748 LGLSHYAMEAGYKRSNESTPAEPVPSKKPKVDPVLPASKWSR 789
>02_01_0475 + 3422629-3422695,3422960-3423216
Length = 107
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = -2
Query: 230 KLGVTADA----IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIK 63
+LG DA ++ + + A+ + KKK+ KK K+K+ K+K ++K + K
Sbjct: 14 RLGTDLDAYGFRVQVVLQLAYTIFGFEEGKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNK 73
Query: 62 QKKA 51
A
Sbjct: 74 LSSA 77
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 159 IPQEERVKERLGQTEALEQTQANIGREEKQNQAKE 55
+P E+ V ER + E LE + I EEK+ + +E
Sbjct: 518 LPSEDSVSERRRKLEFLEMQEELIKEEEKKKEKEE 552
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,702,247
Number of Sequences: 37544
Number of extensions: 332832
Number of successful extensions: 1048
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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