Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_M02
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123     32   0.58 
12_02_0266 - 16582912-16584918,16585041-16585229                       29   3.1  
04_03_0948 - 21021021-21021040,21022743-21022818,21023167-210232...    29   3.1  
08_02_1300 + 25972496-25972582,25972664-25972723,25973786-259738...    29   5.4  
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232...    28   9.4  
09_04_0324 - 16686872-16687074,16687479-16687521,16687735-166880...    28   9.4  
02_01_0314 + 2106976-2107658,2107792-2107931,2108367-2108636,210...    28   9.4  

>02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123
          Length = 422

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 712 FPNPPYAANPYSDAWDKPTPGGTKRRVY 629
           FPNP + A+  S A+D P+P   ++R Y
Sbjct: 241 FPNPAFLASTSSAAYDSPSPSKKQKRFY 268


>12_02_0266 - 16582912-16584918,16585041-16585229
          Length = 731

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 386 LKSVRELR*VGVRSAPDGNNKRSRVYTLYFINYCRCKLYHI 264
           L S+R LR  G      G N+ + + TL  IN+C C + +I
Sbjct: 451 LPSLRHLRAAGSEELGRGINRLTSIRTLEGINFCNCFVENI 491


>04_03_0948 -
           21021021-21021040,21022743-21022818,21023167-21023214,
           21023655-21023745,21024524-21024636,21024718-21024778,
           21025816-21026007,21026029-21026762
          Length = 444

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = -3

Query: 451 TEQNTQYFYKLRILNYVRIMEF*SQSAS-----CGKWASAPLPTVITKDLEFILCI 299
           ++ NTQY  +  I N+++  E  S+  S     CGKW  APL  V + D +   C+
Sbjct: 331 SKTNTQY--RSSIGNWIQCCEILSEGDSDKPVVCGKWRRAPLFVVQSDDWDCSCCL 384


>08_02_1300 +
           25972496-25972582,25972664-25972723,25973786-25973868,
           25974120-25974166,25975194-25975352,25975466-25975644,
           25975738-25975818,25975903-25976046,25976246-25976347
          Length = 313

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 730 EQPXYGFPNPPYAANPYSDAWDKPTPGGT 644
           E P    PNPP+A +PY +A   P  GGT
Sbjct: 267 EPPYNPIPNPPHAQSPYVEA---PQFGGT 292


>10_08_0495 -
           18318028-18320399,18322450-18322981,18323097-18323200,
           18323653-18323701,18323979-18324119,18324889-18324957,
           18325048-18325137,18325301-18326251,18326831-18327502
          Length = 1659

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 742 SQGPEQPXYGFPNPPYAANPYSDAWDKPT 656
           SQ  ++P Y  P PPY A P    +  P+
Sbjct: 780 SQPEQRPAYSQPYPPYGAPPQQPPYGAPS 808


>09_04_0324 -
           16686872-16687074,16687479-16687521,16687735-16688068,
           16688190-16688854
          Length = 414

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 733 PEQPXYGFPNPPYAANPYSDAWDKPTP 653
           P  P    P+PP A  P S  WD P P
Sbjct: 3   PPPPSPPPPSPPPAPAPPSSRWDTPVP 29


>02_01_0314 +
           2106976-2107658,2107792-2107931,2108367-2108636,
           2109938-2110254
          Length = 469

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = -3

Query: 763 RLQLLSGSQGPEQPXYGFPNPPYAA-NPYSDAWDKPTPGGTK 641
           RL  L      +Q  + F   PY      + +WD P PGG K
Sbjct: 267 RLSTLLYGDARQQASFLFGQAPYGQMGSCASSWDNPVPGGFK 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,319,487
Number of Sequences: 37544
Number of extensions: 283497
Number of successful extensions: 660
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)