Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_M02
         (765 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ263748-1|ABB84470.1|   78|Anopheles gambiae para-type sodium c...    24   4.5  
DQ022109-1|AAY51997.1|   66|Anopheles gambiae voltage-gated sodi...    24   4.5  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   5.9  

>DQ263748-1|ABB84470.1|   78|Anopheles gambiae para-type sodium
           channel variant 1 protein.
          Length = 78

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 367 CGKWASAPLPTVITKDLEFILCIL*TIVDVNYITFIIFV 251
           CG+W  +    ++  D+  I   L T+V  N++   +F+
Sbjct: 27  CGEWIESMWDCMLVGDVSCIPFFLATVVIGNFVVLNLFL 65


>DQ022109-1|AAY51997.1|   66|Anopheles gambiae voltage-gated sodium
           channel protein.
          Length = 66

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 367 CGKWASAPLPTVITKDLEFILCIL*TIVDVNYITFIIFV 251
           CG+W  +    ++  D+  I   L T+V  N++   +F+
Sbjct: 21  CGEWIESMWDCMLVGDVSCIPFFLATVVIGNFVVLNLFL 59


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 611 DNTAAAVLVADLPSRGV 561
           DNTAA V+ ADLP + V
Sbjct: 50  DNTAAVVVNADLPVKVV 66


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,556
Number of Sequences: 2352
Number of extensions: 11410
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79418373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)