Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_M01
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    33   0.036
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    29   1.0  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    28   1.8  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    27   2.3  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    27   4.1  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   7.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   7.2  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   9.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.5  

>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 33.5 bits (73), Expect = 0.036
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +2

Query: 221 PGYCPLPQPIPHDTIPTWFHVPPSLTISGPPLSPLQESILAFPAQIM*STIPPGAAGPYL 400
           P +     P+   T P    +PPS +I  PP  P+Q+    FPA    S  PP A G +L
Sbjct: 328 PAHLVQSAPVQRKTTPKIQRLPPS-SIQIPPPKPMQK----FPANAASSESPPNATGNFL 382


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = -1

Query: 242 AVKDSTQVCTHASLHSYLGYRRTPSEENI*NVITVENWMPL*KTL 108
           +++  +++C+ A+ H   G     S ++  +VI+ ++W+PL K L
Sbjct: 181 SLEAESEICSKAAWHPKNGTFAVASTDHFVSVISPDDWLPLYKLL 225


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 200 AVMRVYTPGYCPLPQPIPHDTIPTWFHVPPSLTISGPPLSPLQE 331
           A ++ Y     P P PIP+D + +   VP   TI   P   + E
Sbjct: 22  AAIKAYQYLISPPPSPIPNDKVASTVDVPKCSTIPESPKDSIVE 65


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = +1

Query: 259 YDSDLVPRTTFVDHQWPATITTAGIHTSFSSANHVIDYTARSS-GAVFKSTFRVSPN--- 426
           Y S   PR+T V    P +I++   HT+  S     +    S   A  + T    P    
Sbjct: 668 YQSSATPRSTDVSPTRPDSISSVRSHTAVESPRSSFEELQPSEIPAESEFTLENVPTSLI 727

Query: 427 RN*YFLKDRRLRTTLSQAAPSDDS 498
           R+ Y L  R+ R   S ++ S++S
Sbjct: 728 RSSYALNTRKTRRNFSHSSASNES 751


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -3

Query: 675 ETSHIERKIKRVVRHRGFDIRTLYNDIAILTLDQPVTFTKNIRPICLPSGGRAYAGLVAT 496
           ET+    K+  ++ HRG  +  + ND +  ++D      K    +C     R   GL+AT
Sbjct: 239 ETTENYHKVLGILMHRGAQVLRISNDFS--SIDASKRIFKEHESMCYGGDWRHTDGLLAT 296


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 583 CQDRNVVVQCANVKTSMPDNSFNFSF 660
           C++ N +V C N  TS+  N +   F
Sbjct: 205 CENSNAIVFCDNCNTSVHQNCYGIPF 230


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 233 PLPQPIPHDTIPTWFHVPP 289
           P+P+PIP D +PT+  + P
Sbjct: 865 PIPEPIPVDAMPTFTVLVP 883


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 PLQESILAFPAQIM*STIPPGAAGPYLSRHSE 415
           P   +I+  P++   S +PP A+GPY     E
Sbjct: 310 PYTSNIVENPSEDNLSPLPPPASGPYSQEEEE 341


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 16  LAHFVVKIKYQYIEKSKRMVVFLKIIEIKCFNVFHNGIQFS 138
           L   + K+  Q+I+ S  +   L + EI+C ++   GI+ S
Sbjct: 68  LGGVINKVNEQFIQLSLTLSTQLNLDEIQCASLLQRGIEAS 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,540,108
Number of Sequences: 5004
Number of extensions: 80010
Number of successful extensions: 218
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)