Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_M01
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142 33 0.26
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419... 31 1.4
07_03_1160 - 24430240-24431268 30 1.9
02_03_0306 - 17540258-17540610,17544063-17544128,17544266-175443... 30 2.5
08_01_0351 + 3095639-3095995,3096134-3096187,3096407-3096490,309... 29 4.3
01_06_1731 + 39516897-39517632,39517744-39517912,39517985-395184... 29 4.3
01_01_0082 + 625198-625719 29 5.7
03_02_0775 - 11096620-11097240 28 7.5
03_05_0395 - 23763531-23764493,23764539-23764708,23764750-237651... 28 9.9
01_06_0926 + 33075575-33076618 28 9.9
>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
Length = 534
Score = 33.1 bits (72), Expect = 0.26
Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 209 RVYTPGYCPLPQPIPHDTIPTWF-HVPPSLTISGPPLSPLQESILAFP 349
R + G+ LP IP D WF VPP L PP SP SIL P
Sbjct: 76 RWFAQGFHFLPARIPMDGPSGWFLKVPPPLHTVDPPGSPPPASILLEP 123
>02_03_0381 -
18339290-18339994,18340083-18340103,18341925-18341982,
18342084-18342220,18342480-18342650
Length = 363
Score = 30.7 bits (66), Expect = 1.4
Identities = 32/111 (28%), Positives = 39/111 (35%)
Frame = +2
Query: 176 FFCIQGRNAVMRVYTPGYCPLPQPIPHDTIPTWFHVPPSLTISGPPLSPLQESILAFPAQ 355
F C+ G Y GY P P H P H P L+ P SP + S + F A
Sbjct: 136 FACLSGSGN----YGSGY---PPPHQHHMAPPPIHTPSRLSHDSPGGSPWR-SPMQFQAP 187
Query: 356 IM*STIPPGAAGPYLSRHSELVQIGIDTS*RTDGCGPLSRKLPHPMTVATR 508
+ PP A P S HS G+ P PHP + R
Sbjct: 188 MSGYRGPPPGAPPPWSPHS-----GVPPPWNPHSAPPSQGLYPHPPSYGPR 233
>07_03_1160 - 24430240-24431268
Length = 342
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 218 TPGYCPLPQP-IPHDTIPTWFHVPPSLTISGPPLSPLQ 328
TPG PLP P +P P VPP GPP+ P+Q
Sbjct: 69 TPGVPPLPNPDVPPMNKPD---VPPMPKPDGPPIPPVQ 103
>02_03_0306 -
17540258-17540610,17544063-17544128,17544266-17544397,
17544530-17544685,17545216-17545375
Length = 288
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = -3
Query: 414 SECRLKYGPAAPGGIVDHMICAGKASMDSCSGDSGGPLMVNEGGTWNQVGIVSWGIGCGK 235
S+CR++ P G+ G S + GD G V GG + VG WG C +
Sbjct: 221 SDCRIEE-PQLEEGLGIGATEEGLGSSERMVGDWGWGRWVPRGGIGSGVGDGRWGERCVR 279
Query: 234 GQYPG 220
G++ G
Sbjct: 280 GRWVG 284
>08_01_0351 +
3095639-3095995,3096134-3096187,3096407-3096490,
3096972-3097097,3097174-3097241,3097324-3097393,
3097597-3097662,3098404-3098454
Length = 291
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 560 QRTFVPFVYRAAVGLTLAL-LPLSSDGAACERVVRSRLSFKKYQFRFGLTLNVDLNTA 390
QR VY L +AL LP S ACER R KKY R G+ VD+ A
Sbjct: 156 QRCIEVGVYTGYSSLAVALALPESGRLVACERDERCLEVAKKYYQRSGVAHKVDVKHA 213
>01_06_1731 +
39516897-39517632,39517744-39517912,39517985-39518488,
39518619-39518747,39519849-39519990,39520082-39520453
Length = 683
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 227 YCPLPQPIPHDTIPTWFHVPPSLTISGPPLSPLQESILAFP 349
YCP P P P+ +P VPP G P+ PL ++ P
Sbjct: 45 YCPQPPPPPYQVMP----VPPPPPPVGLPVPPLPATMAPQP 81
>01_01_0082 + 625198-625719
Length = 173
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = +2
Query: 230 CPLPQPIPHDTIPTWFHVPPSLTISGPPLSPLQESILAFPAQIM*ST---IPPGAAGPY 397
C P P D +PT + PP + PP SP +A+P ST PP G Y
Sbjct: 48 CTYASPPPPDVLPTPVYYPPPPPVYYPPPSP---PPVAYPPPTTPSTNCPPPPYGGGGY 103
>03_02_0775 - 11096620-11097240
Length = 206
Score = 28.3 bits (60), Expect = 7.5
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = -3
Query: 378 GGIVDHMICAGKASMDSCSGDSGG--PLMVNEGGTWNQVGIVSWGIGCGK---GQYPGV 217
GG D + AG SG GG P+MV GG W + W CG+ GQ+ GV
Sbjct: 106 GGGGDAVAAAGDGDAGG-SGSRGGVAPVMVARGGAWRRGRRGPW--RCGRRHGGQFGGV 161
>03_05_0395 -
23763531-23764493,23764539-23764708,23764750-23765112,
23765298-23765508,23766214-23766381
Length = 624
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 343 FSSANHVIDYTARSSGAVFKSTFRVSPNRN 432
++ A +DY A G +F ST+RV+ +R+
Sbjct: 225 WADAESRLDYAAFGGGVIFDSTYRVNHHRS 254
>01_06_0926 + 33075575-33076618
Length = 347
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 378 GGIVDHMICAGKASMDSCSGDSGGPLMVN 292
GG+ D +C+G +D+ GDSGG V+
Sbjct: 144 GGVADP-VCSGGDGVDAACGDSGGARAVS 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,554,236
Number of Sequences: 37544
Number of extensions: 572964
Number of successful extensions: 1721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1717
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -