Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_L24
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 46 6e-06
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 46 9e-06
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom... 27 3.2
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 27 4.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 4.3
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 5.6
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 26 7.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 7.4
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 9.8
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 46.0 bits (104), Expect = 6e-06
Identities = 16/45 (35%), Positives = 31/45 (68%)
Frame = -2
Query: 820 GDLREDLXIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 686
G ++D+ +P+G+LG ++ FD G++L+ TV+ + GEE +A +
Sbjct: 108 GTTKDDVRLPEGELGNEIEEGFDEGRDLIITVVSAMGEETALACR 152
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 45.6 bits (103), Expect = 9e-06
Identities = 16/45 (35%), Positives = 31/45 (68%)
Frame = -2
Query: 820 GDLREDLXIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 686
G ++D+ +P+G+LG ++ F+ GK+L+ TV+ + GEE +A +
Sbjct: 108 GTTKDDVRLPEGELGNEIEEGFEEGKDLIITVVSAMGEEIALACR 152
>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 158
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +2
Query: 2 MGPTPRPPRLSPLAPTLTNKLCLTHYPGAGCFIKHRYF*IAKTIYPTTWKKS 157
+ PT P LSP+ P L + +PG + H + + + T K S
Sbjct: 79 LSPTSSSPSLSPMTPNLYPNVLPNVHPGVSNYTHHPLSGLHQNVGSRTRKSS 130
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 708 RSASSPSKQTQLSTNKPTQH 649
+S SSPS+ + LST+KP H
Sbjct: 286 KSESSPSRSSVLSTSKPEVH 305
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 648 NAELVYLSRAVFALTAMTHSSPQDFSTVHNNSLPLSKS 761
++ +V S + +LTA+ S+P S+V N+S P++ S
Sbjct: 2558 SSTVVNSSTPITSLTALNSSTPITSSSVLNSSTPITSS 2595
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 648 NAELVYLSRAVFALTAMTHSSPQDFSTVHNNSLPLSKS 761
++ +V S + + TA+ S+P STV N+S P++ S
Sbjct: 3026 SSTVVNSSTPITSSTALNTSTPITSSTVLNSSTPITSS 3063
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 648 NAELVYLSRAVFALTAMTHSSPQDFSTVHNNSLPLSKS 761
++ +V S + + TA+ S+P STV N+S P++ S
Sbjct: 3410 SSTVVNSSTPITSSTALNTSTPITSSTVVNSSTPITSS 3447
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 733 CTVLKSCGEECVIAVKANTALDK*TNSAFIGLTNF*FFTINNSYINVKHNIVY 575
C V+ E + NT D +N IG FF +N +++NVK ++Y
Sbjct: 219 CVVINKDSEFLQMCRPINTTQD--SNEHSIGSL---FFYLNYNFVNVKRQVIY 266
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 8 PTPRPPRLSPLAPTLTNKLCLTHY 79
PTP PP+++ +N++ + HY
Sbjct: 249 PTPEPPKIASANAGSSNEISIPHY 272
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -2
Query: 790 DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTALDK*TNSAFIGLTNF*F 623
D +L L T +GK C + +C++A + A + TNS F+ +F F
Sbjct: 2869 DSNLAYVLYTSGSTGKPKGCCLTHHNVVQCMLAFQDQFAGEWDTNSRFLAFASFHF 2924
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -2
Query: 160 QTLLPRC--WVYSFGNLKVAVFNE 95
QT+LP W Y F NLK+ V +E
Sbjct: 422 QTILPNANRWYYFFKNLKLFVLDE 445
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,864
Number of Sequences: 5004
Number of extensions: 45199
Number of successful extensions: 201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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