Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L24
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657...    41   0.001
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046...    40   0.002
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648...    39   0.004
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70...    38   0.013
02_05_0250 + 27153048-27154453,27154546-27154885                       30   2.6  
01_01_0180 + 1533219-1533536,1533658-1533825,1535404-1535475,153...    30   2.6  
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695     29   4.5  
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703...    28   7.8  

>07_03_1141 -
           24264534-24264635,24265542-24265616,24265709-24265765,
           24265903-24266025,24266509-24266520,24267014-24267157,
           24267606-24267626
          Length = 177

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
 Frame = -2

Query: 820 GDLREDLXIP-DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 686
           G+ ++DL +P D  L  Q++T F  GK+L+ TV+ + GEE + A+K
Sbjct: 127 GNTKDDLRLPTDDSLLGQIKTGFGEGKDLVVTVMSAMGEEQICALK 172


>12_02_0477 +
           19503678-19503803,19504381-19504422,19504631-19504684,
           19504946-19505068,19505154-19505210,19505299-19505373,
           19505925-19506026
          Length = 192

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/46 (39%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = -2

Query: 820 GDLREDLXIP-DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 686
           G+ ++DL +P D +L +Q++  F  GK+L+ TV+ + GEE + A+K
Sbjct: 142 GNTKDDLRLPTDDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALK 187


>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
            31165816-31167650,31169294-31169424,31169993-31170075,
            31170426-31170680,31171125-31171220,31171695-31171775,
            31171811-31171968,31172434-31172534,31172614-31172629,
            31173390-31173439,31174558-31174588,31175156-31175305,
            31176135-31176173,31176288-31176410,31176496-31176552,
            31176837-31176911,31177003-31177107
          Length = 1496

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = -2

Query: 820  GDLREDLXIP-DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 686
            G  ++DL +P D  L TQ++  F  GK+L+ TV+ + GEE + A+K
Sbjct: 1445 GGTKDDLRLPSDEALLTQIKDGFAEGKDLIVTVMSAMGEEQICALK 1490


>07_01_0093 +
           702223-702348,703434-703556,703646-703702,703797-703871,
           704105-704212
          Length = 162

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
 Frame = -2

Query: 820 GDLREDLXIPDGD-LGTQLRTDF-DSGKELLCTVLKSCGEECVIAVK 686
           G+ ++DL +P  D L  Q++  F + GK+++ TV+ + GEE + AVK
Sbjct: 110 GNTKDDLRLPTDDTLTNQIKNGFGEEGKDMILTVMSAMGEEQICAVK 156


>02_05_0250 + 27153048-27154453,27154546-27154885
          Length = 581

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -2

Query: 820 GDLREDLXIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTA 674
           GD   DL IPD +  TQ+ T+  S     C V  S G  C  AV A+ +
Sbjct: 251 GDRSVDLPIPDNETNTQI-TEMRSNGAEKCDVQLSGGTLCSEAVPASNS 298


>01_01_0180 +
          1533219-1533536,1533658-1533825,1535404-1535475,
          1536174-1536179,1536228-1536440,1537434-1537700,
          1537947-1538267
          Length = 454

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 5  GPTPRPPRLSPLAPTLTNKLCLTHY 79
          GPTP PP   P +P+L  +  + HY
Sbjct: 3  GPTPPPPEEEPSSPSLRLRCAVQHY 27


>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
          Length = 664

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 793 PDGDLGTQLRTDFDSGKELLCTVLKSCGE 707
           PDGDL  ++R   +SGKEL    L   G+
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNALALIGK 234


>12_01_1024 -
           10467644-10469274,10469424-10469482,10469820-10470357,
           10470975-10471666,10471912-10472062,10473797-10473864,
           10473964-10474042,10474763-10474765,10476427-10477255
          Length = 1349

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 805 DLXIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKAN 680
           D  I  G  GTQ     D   +L  +VLKS  + CV A KA+
Sbjct: 736 DHFIELGKSGTQCSGYLDLVDDLTTSVLKSSSDTCVSAAKAS 777


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,021,334
Number of Sequences: 37544
Number of extensions: 285978
Number of successful extensions: 821
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)