Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L23
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   2.4  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    25   5.5  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    25   5.5  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   7.2  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   9.5  

>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 41  WNDNNVIINKHLLKQILMETNFHLPIYYTFKFEREYFVIYLFXSYIKNKNTYHLTEYV 214
           ++D+  II  +L K+++ E   +L       F   + +  L   YIK +    LTEYV
Sbjct: 406 FSDSAEIIKFYLEKKLIKELTSYLEALSAKGFAFSHEISTLIYLYIKLRKLDKLTEYV 463


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -2

Query: 496 VTFTISDEDVADLISGKLNPQKAFXQGKIKIQGNMGLAMKLTDXQRQAAG-RIETIRSXL 320
           +T  +SD++V D+I    +PQ A     I+   N+G    +T    +  G +  TI    
Sbjct: 310 ITDVVSDDEVVDIIKLSESPQDA-ANNIIRYAQNVGAVDDITCLVVRLPGWKKRTINDF- 367

Query: 319 *TEQVRGSELVAYQPRDS 266
            T+ +R  E  AY PR S
Sbjct: 368 -TKNLR-LEKSAYHPRRS 383


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 312 SRSADLSWSRTSHEIVIRKGY 250
           S+  +++WS+TS+EIV   G+
Sbjct: 336 SQVCNMAWSKTSNEIVTTHGF 356


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 508 GKPDVTFTISDEDVADLIS 452
           GKP++ F   DE+ ADL++
Sbjct: 695 GKPEILFMGPDENTADLVN 713


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 211 VLS*MISVFIFYVRXK*IDHKIFTFELESVINR*MKIRFHKYLF 80
           +L   I +FI  +  K ++ K+F + L   +   M+  FH+ +F
Sbjct: 540 ILPSYIDLFISLMSFKNLNFKLFDYNLAHHVKESMERAFHQLVF 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,738
Number of Sequences: 5004
Number of extensions: 31468
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)