Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L23
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41544-2|AAA83184.1|  436|Caenorhabditis elegans Dehydrogenases,...    52   2e-07
U28739-13|AAK68187.1|  418|Caenorhabditis elegans Dehydrogenases...    48   4e-06
Z48638-10|CAA88566.1|  118|Caenorhabditis elegans Hypothetical p...    48   6e-06
U42013-1|AAB06496.1|  415|Caenorhabditis elegans UNC-24 protein.       33   0.18 
AF045644-5|AAC02604.1|  415|Caenorhabditis elegans Uncoordinated...    33   0.18 

>U41544-2|AAA83184.1|  436|Caenorhabditis elegans Dehydrogenases,
           short chain protein28 protein.
          Length = 436

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 22/44 (50%), Positives = 31/44 (70%)
 Frame = -2

Query: 505 KPDVTFTISDEDVADLISGKLNPQKAFXQGKIKIQGNMGLAMKL 374
           K + T T++D D  D+ +GKLN QKAF  GK+K++GN+ L  KL
Sbjct: 381 KANATVTVADSDFVDIAAGKLNAQKAFMSGKLKVKGNVMLLQKL 424


>U28739-13|AAK68187.1|  418|Caenorhabditis elegans Dehydrogenases,
           short chain protein6 protein.
          Length = 418

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = -2

Query: 538 GKGKVT-YXGSGKPDVTFTISDEDVADLISGKLNPQKAFXQGKIKIQGNMGLAMKLTDXQ 362
           G+G +T    SGK DV FT++ E  A L +GKL P  A    K++I G+M  AMKL    
Sbjct: 351 GEGALTDKKASGKADVKFTLAPEHFAPLFTGKLRPTTALMTKKLQISGDMPGAMKLESLL 410

Query: 361 RQ 356
           R+
Sbjct: 411 RK 412


>Z48638-10|CAA88566.1|  118|Caenorhabditis elegans Hypothetical
           protein ZK892.2 protein.
          Length = 118

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
 Frame = -2

Query: 541 EGKGKVTYXG--SGKP-DVTFTISDEDVADLISGKLNPQKAFXQGKIKIQGNMGLAMKL 374
           + K    Y G  S +P ++   I D D   + +GK+ P +AF QGK+K++GN+  AMKL
Sbjct: 47  DAKSDTPYVGDDSSRPVEIEINIKDSDFIAIAAGKMKPDQAFMQGKMKLKGNIAKAMKL 105


>U42013-1|AAB06496.1|  415|Caenorhabditis elegans UNC-24 protein.
          Length = 415

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -2

Query: 538 GKGKVTYXGSGKPDVTFTISDEDVADLISGKLNPQKAFXQGKIKIQGNMGLAMKL 374
           G G      S  PDV F  S E    +++ +++P   +  G +K++G++  AM+L
Sbjct: 350 GSGSAYKGTSLNPDVVFETSLEVFGKILTKEVSPVTVYMNGNLKVKGSIQDAMQL 404


>AF045644-5|AAC02604.1|  415|Caenorhabditis elegans Uncoordinated
           protein 24 protein.
          Length = 415

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -2

Query: 538 GKGKVTYXGSGKPDVTFTISDEDVADLISGKLNPQKAFXQGKIKIQGNMGLAMKL 374
           G G      S  PDV F  S E    +++ +++P   +  G +K++G++  AM+L
Sbjct: 350 GSGSAYKGTSLNPDVVFETSLEVFGKILTKEVSPVTVYMNGNLKVKGSIQDAMQL 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,019,188
Number of Sequences: 27780
Number of extensions: 177357
Number of successful extensions: 356
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)