Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L23
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   3.5  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   8.1  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   8.1  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   8.1  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 196 SFN*VRLIMSIKCPXPSSVTF-PYNYLVAGTRPTQI 300
           S N   + +S KCP PS  ++     LVA + PT I
Sbjct: 623 SLNSTNVTLSTKCPYPSYYSYIGVLTLVATSMPTYI 658


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 274 VAGTRPTQIRGPAPSTVXIGSS 339
           +AGT  T    P P +V +GS+
Sbjct: 41  LAGTSTTAAATPTPPSVPVGSA 62


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 516 TALENPT*PSRSATKTWPILYPGN 445
           T L+ PT P+R   +  P   PGN
Sbjct: 20  TNLDPPTRPTRLRREAKPEAEPGN 43


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 516 TALENPT*PSRSATKTWPILYPGN 445
           T L+ PT P+R   +  P   PGN
Sbjct: 21  TNLDPPTRPTRLRREAEPEAEPGN 44


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 516 TALENPT*PSRSATKTWPILYPGN 445
           T L+ PT P+R   +  P   PGN
Sbjct: 21  TNLDPPTRPARLRREAKPEAEPGN 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,913
Number of Sequences: 438
Number of extensions: 2427
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)