Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_L20
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 56 4e-09
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 47 3e-06
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 28 1.5
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 27 1.9
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.4
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 4.5
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 5.9
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.9
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.9
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 56.4 bits (130), Expect = 4e-09
Identities = 27/61 (44%), Positives = 34/61 (55%)
Frame = -2
Query: 691 QVAXMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFDG 512
Q A +EE GG+D I DLQ+ +IY AY IIE+YF+ E+ L P AF F
Sbjct: 463 QYAVYVEEAGGMDMIHDLQSSGNNDIYLKAYSIIEKYFSDEDAVEDLAPETENGAFTFGN 522
Query: 511 G 509
G
Sbjct: 523 G 523
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 46.8 bits (106), Expect = 3e-06
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = -2
Query: 685 AXMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQF 518
A +E+ GG+D I + Q EIY+ AY+IIE++F E+E L P F F
Sbjct: 465 AVYVEDAGGMDLIHECQNSSNSEIYQKAYNIIEKFFGEEDEIEELEPETVGDTFTF 520
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 592 IEQYFAGEEEDASLVPAAGEAAFQFDGGAADKE 494
IE+ A E S VP+AG A GGAA E
Sbjct: 51 IEELIAAGNEKLSTVPSAGAVATPAAGGAAGAE 83
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 444 RGVGVGSAPSXKRKGGGSLSAAPPSNWKAASPAAGTSDASSSSPA 578
RG+ + PS S PPS +A+PA + ASS++PA
Sbjct: 43 RGLTIPPPPSVDHSAPPS--GPPPSYSNSAAPATPAASASSAAPA 85
>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 379 TASPNTGPLVVYNKCTPSFT 320
+A PN GP +Y +C +FT
Sbjct: 233 SAFPNYGPFYIYGQCVATFT 252
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 447 GVGVGSAPSXKRKGGGSLSAAPPSNWKAASPAAGTSDASSSSP 575
G+ G P + G S SAAPPS +P + +S+ P
Sbjct: 103 GLFAGGMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPP 145
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 324 KLGVHLL*TTNGPVFGEAVEEVFIRCLVSGAAS 422
KL + + +TN PVFG AV+ V ++S ++S
Sbjct: 158 KLSSNSIKSTNAPVFGTAVKNVTGENILSASSS 190
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 492 GSLSAAPPSNWKAASPAAGTSDASSSSPA 578
G+ S APP++ + +PA G+ S PA
Sbjct: 180 GTTSNAPPASSTSTTPATGSGGFSFGKPA 208
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 453 GVGSAPSXKRKGGGSLSAAPPSNWKAASPAAGTSDASSSS 572
G S+ S SL ++ S+ +A+P+ +S +SSSS
Sbjct: 113 GAASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSS 152
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 462 SAPSXKRKGGGSLSAAPPSNWKAASPAAGTSDASSSSPA 578
S+ S S S+A PS+ K++S + +S +S++PA
Sbjct: 195 SSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPA 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,254
Number of Sequences: 5004
Number of extensions: 41018
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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