Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_L20
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 64 1e-10
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 64 1e-10
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 64 1e-10
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 40 0.002
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 40 0.002
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 40 0.002
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 33 0.19
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 33 0.19
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 29 2.4
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 29 2.4
AC024200-6|AAF35998.1| 314|Caenorhabditis elegans Hypothetical ... 29 2.4
AF036692-6|AAB88328.1| 397|Caenorhabditis elegans Hypothetical ... 29 3.2
AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical ... 29 4.2
Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical pr... 28 7.3
AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical... 28 7.3
AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical ... 28 7.3
AL032650-1|CAE54929.1| 551|Caenorhabditis elegans Hypothetical ... 28 7.3
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 28 7.3
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/59 (49%), Positives = 42/59 (71%)
Frame = -2
Query: 691 QVAXMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFD 515
QV IEECGG+DKIE+LQ HE +IYK+A++II+ +F+ ++E + V A +AF D
Sbjct: 441 QVTSEIEECGGLDKIENLQNHENEDIYKLAFEIIDNFFSSDDETGN-VEGAQSSAFGGD 498
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/59 (49%), Positives = 42/59 (71%)
Frame = -2
Query: 691 QVAXMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFD 515
QV IEECGG+DKIE+LQ HE +IYK+A++II+ +F+ ++E + V A +AF D
Sbjct: 441 QVTSEIEECGGLDKIENLQNHENEDIYKLAFEIIDNFFSSDDETGN-VEGAQSSAFGGD 498
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/59 (49%), Positives = 42/59 (71%)
Frame = -2
Query: 691 QVAXMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFD 515
QV IEECGG+DKIE+LQ HE +IYK+A++II+ +F+ ++E + V A +AF D
Sbjct: 350 QVTSEIEECGGLDKIENLQNHENEDIYKLAFEIIDNFFSSDDETGN-VEGAQSSAFGGD 407
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Frame = -2
Query: 676 IEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYF----AGEEE 563
+EE GG+D +E LQ + +IY AY II Q+F AGE+E
Sbjct: 476 VEENGGLDSLERLQESQSEQIYTQAYRIITQFFTDDDAGEKE 517
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Frame = -2
Query: 676 IEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYF----AGEEE 563
+EE GG+D +E LQ + +IY AY II Q+F AGE+E
Sbjct: 476 VEENGGLDSLERLQESQSEQIYTQAYRIITQFFTDDDAGEKE 517
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Frame = -2
Query: 676 IEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYF----AGEEE 563
+EE GG+D +E LQ + +IY AY II Q+F AGE+E
Sbjct: 476 VEENGGLDSLERLQESQSEQIYTQAYRIITQFFTDDDAGEKE 517
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = -2
Query: 688 VAXMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAG 536
VA +EE G +K+E L + ++I+ AY II++++ ++ + P AG
Sbjct: 449 VAIKLEEIGCREKLEFLCESQSVDIHARAYTIIDRFYVDDDAPLNDDPFAG 499
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = -2
Query: 688 VAXMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAG 536
VA +EE G +K+E L + ++I+ AY II++++ ++ + P AG
Sbjct: 449 VAIKLEEIGCREKLEFLCESQSVDIHARAYTIIDRFYVDDDAPLNDDPFAG 499
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 272 SLGKKFHINVKCKNNLRKTRRTLVVNNQRT 361
SL +F V C NN ++ RT + N+QRT
Sbjct: 704 SLDHEFRETVSCVNNCLESARTALTNSQRT 733
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 272 SLGKKFHINVKCKNNLRKTRRTLVVNNQRT 361
SL +F V C NN ++ RT + N+QRT
Sbjct: 704 SLDHEFRETVSCVNNCLESARTALTNSQRT 733
>AC024200-6|AAF35998.1| 314|Caenorhabditis elegans Hypothetical
protein Y71F9AL.9 protein.
Length = 314
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 402 LVSGAASVG*AWGQR-GVGVGSAPSXKRKGGGSLSAAPPSNWKAASPAAGTSDASSSSPA 578
L GA+S+ W GV V +A K K + +AAP + A +PA + ++PA
Sbjct: 49 LEDGASSILGGWTTSDGVSVTAAKKKKNKSKKTETAAPETTQSAPAPAKAAPAPTVAAPA 108
>AF036692-6|AAB88328.1| 397|Caenorhabditis elegans Hypothetical
protein C44B12.5 protein.
Length = 397
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 459 GSAPSXKRKGGGSLSAAPPSNWKAASPAAGTSDASSSSP 575
G+AP+ G+ AAPP+ W A AA T A++ +P
Sbjct: 346 GAAPAAPSTSWGAAPAAPPT-WGGAPTAAPTWGAANDAP 383
>AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical
protein Y55F3AR.2 protein.
Length = 254
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 372 EAVEEVFIRCLVSGAASVG*AWGQRGVGVGSAPSXKRKGGGSLSAAPPSNWKAASPAAG 548
+ +E +R +V+ AS AW G G + S + S+APP AA P AG
Sbjct: 91 QGADESGLRSMVAKYASTSAAWS--GTGQRLSGSTTGSSSSTSSSAPPRASGAAPPPAG 147
>Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical
protein R06C7.8 protein.
Length = 987
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -2
Query: 679 MIEECGGIDKIEDLQTHEKMEIYKMAY---DIIEQYFAGEEEDASLVPAAGEAAFQFDGG 509
M+EE + K+ + E++E+ + D++++YF GE D P F+F+ G
Sbjct: 113 MLEEFKDVLKLARDRLSERIEMTAIESGFRDLVDEYFNGESGDMFTRPDETMDLFRFNAG 172
Query: 508 AADK 497
+ K
Sbjct: 173 SKKK 176
>AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -2
Query: 661 GIDKI---EDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFDGGAA 503
GI+KI D++ E +++ K +E+ A EE+DAS P++ GG A
Sbjct: 20 GIEKILADRDIKRKENLQLKKACESALEELKAAEEQDAS--PSSNGEHLPDAGGTA 73
>AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -2
Query: 661 GIDKI---EDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFDGGAA 503
GI+KI D++ E +++ K +E+ A EE+DAS P++ GG A
Sbjct: 20 GIEKILADRDIKRKENLQLKKACESALEELKAAEEQDAS--PSSNGEHLPDAGGTA 73
>AL032650-1|CAE54929.1| 551|Caenorhabditis elegans Hypothetical
protein Y6B3A.1b protein.
Length = 551
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -2
Query: 661 GIDKI---EDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFDGGAA 503
GI+KI D++ E +++ K +E+ A EE+DAS P++ GG A
Sbjct: 20 GIEKILADRDIKRKENLQLKKACESALEELKAAEEQDAS--PSSNGEHLPDAGGTA 73
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 447 GVGVGSAPSXKRKGGGSLSAAPPSNWKAASPAAGTSDASSSSPAKY 584
G+GV +AP+ +APPS +A PA T SS Y
Sbjct: 567 GIGVSTAPASMEPSQSVDQSAPPS--QAQIPATSTPSTSSQQQNAY 610
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,053,059
Number of Sequences: 27780
Number of extensions: 241803
Number of successful extensions: 890
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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