Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L20
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 501 SAAPPSNWKAASPAAGTSDASSSSPAKY 584
           SAA  ++   + P  G+S  S SSP+ +
Sbjct: 72  SAAAITSTSPSYPGGGSSSPSPSSPSSF 99


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 381  EEVFIRCLVSGAASVG*AWGQRGVGVGSAPSXKRKGGGSL 500
            E+V + CL  G  +    W  RG  + S+   ++   GSL
Sbjct: 1292 EDVKLPCLAVGVPAPEVTWKVRGAVLQSSDRLRQLPEGSL 1331


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 649 IEDLQTHEKMEIYKMAYDIIEQYFA 575
           I   +   K EI   A D +EQYF+
Sbjct: 54  IHGTEPRSKEEILLHAKDFLEQYFS 78


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = -3

Query: 387 LLQQPHRTRVRWL 349
           ++++P +TR+RW+
Sbjct: 347 MMRRPKKTRLRWM 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,369
Number of Sequences: 438
Number of extensions: 2825
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)