Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L19
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    27   0.16 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.48 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.8  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = -2

Query: 213 GVCVEGNRCSCN--TGYVTDSMDPS--GFRCIPH 124
           G+C EG +CSCN   G   +  + S     C+PH
Sbjct: 77  GICAEGMQCSCNKCIGCSAEKFECSKTSNPCLPH 110


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = -2

Query: 627 GPLPSPGQQPIYPTQQF--NQTQMPPHYPNQNVYPYPSPLQPWFPGQIPANGNHTQNGFL 454
           GP PSP Q P  P +    N +Q PP        P  +P Q       PA+G H     L
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMIS---PASGIHQMQQLL 78


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 519 PLQPWFPGQIPANGNHTQNGFLDLS 445
           PL+P F   +    NH  N F  L+
Sbjct: 118 PLEPDFTSDVTERDNHLVNAFKTLT 142


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/19 (36%), Positives = 8/19 (42%)
 Frame = -2

Query: 189 CSCNTGYVTDSMDPSGFRC 133
           C C+ GY     DP    C
Sbjct: 296 CRCDPGYFRAEKDPKKMPC 314


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 347 SPISPTPDTMGSNQHQAQI 291
           +P++PTP T+     +AQI
Sbjct: 158 TPVTPTPTTVQQLLRRAQI 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,622
Number of Sequences: 438
Number of extensions: 4349
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)