Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L17
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.7  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.9  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 30  NSHLQSHTNVKFXRQITSTTYL*LTKIQHT 119
           NSHL+SH+NV +  +  + TY   TK  H+
Sbjct: 33  NSHLKSHSNV-YQYRCANCTY--ATKYCHS 59


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 294 YQTISLSICRGYLVALFRTYAYYKTIPHKCHFNLETRL 181
           Y+     IC      LF+  A+ K IPH     LE ++
Sbjct: 227 YENAVSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQV 264


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 294 YQTISLSICRGYLVALFRTYAYYKTIPHKCHFNLETRL 181
           Y+     IC      LF+  A+ K IPH     LE ++
Sbjct: 227 YENAVSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQV 264


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -3

Query: 598 LYS*PSLVKFAVTLWMLILRYTFDWFYQNFYVCTN 494
           ++S P+++   + + M ILR + D   +NF  C++
Sbjct: 88  VFSSPTILISYIYILMAILRMSADGGCRNFSTCSS 122


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 206  VILILRLAFQVNSSIDLWHYHKNKLK 129
            +++I+ LAF    S+  W Y K  L+
Sbjct: 1008 LLVIIVLAFVFRESVGAWAYSKYGLR 1033


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,987
Number of Sequences: 438
Number of extensions: 3905
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)