Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_L16
(316 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0115 - 11248021-11248101,11249017-11249118 84 2e-17
05_03_0661 - 16726958-16726966,16727133-16727234 57 3e-09
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061 28 1.3
06_03_0336 + 19671500-19672150,19672681-19673301 27 2.3
04_01_0588 + 7657510-7657992,7658397-7658843 27 3.1
08_02_0588 + 19036509-19039235 27 4.1
02_05_0773 + 31654985-31655365,31655486-31655610,31655712-316560... 27 4.1
08_01_0349 - 3082700-3083407 26 7.1
06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832... 26 7.1
01_05_0410 + 21914995-21915168,21915268-21915353,21915446-219156... 26 7.1
08_01_0083 - 604175-605776 25 9.4
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 25 9.4
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 25 9.4
>01_02_0115 - 11248021-11248101,11249017-11249118
Length = 60
Score = 84.2 bits (199), Expect = 2e-17
Identities = 37/52 (71%), Positives = 43/52 (82%)
Frame = -2
Query: 216 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 61
MAKSKNHT HNQ+ KAH+NGIKKP++ R ST GMDPKFLRNQR+ +K N K
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKK 52
>05_03_0661 - 16726958-16726966,16727133-16727234
Length = 36
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = -2
Query: 216 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 109
MAKSKNHT HNQ+ KAH+NGIKKP++ R ST G +
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGFE 36
>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
Length = 691
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 153 KKPRKTRHESTLGMDPKFLRNQ-RFCKKG 70
+KP K R L + +F+R+Q + CKKG
Sbjct: 454 RKPTKPRQRGKLKLQSQFIRDQNKICKKG 482
>06_03_0336 + 19671500-19672150,19672681-19673301
Length = 423
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 118 WHGSKIFKESKVLQEG*PEASQATREGG 35
WH FK S+ G PEA+ A EGG
Sbjct: 223 WHEINQFKSSEKSLVGMPEAAAAEEEGG 250
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -3
Query: 263 SSVLSSESKWIENASKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQNF*G 93
S VL S S+W ++S+W I + + T + +M Q RP L W ++ G
Sbjct: 214 SGVLPSSSEWRSSSSRWDLGEITRRM-DTLDM-QMGGGQQRRPPAEDGLGWASSWFG 268
>08_02_0588 + 19036509-19039235
Length = 908
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 46 ELLGWLQVTLLAKPLIP*KFWIHAKGGFVPG 138
ELLGW QV A ++P + + A F PG
Sbjct: 423 ELLGWKQVLAQAANVLPKRRMVSATRRFPPG 453
>02_05_0773 +
31654985-31655365,31655486-31655610,31655712-31656026,
31656145-31656314,31656408-31656751
Length = 444
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 177 RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFC 79
++AHRNG+K T H++ G+ P+ + + + C
Sbjct: 121 QRAHRNGVKVLALTDHDTMAGV-PEAIESAKQC 152
>08_01_0349 - 3082700-3083407
Length = 235
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 133 PGLPWLFDTISVSFAVLVMICMIL*LCHFDAFSIHLDSEDRTEDLTVTDFTC 288
P WLF I + A L M+C L D ++ ++D +DL D C
Sbjct: 182 PVFLWLFGPIPMFAACLAMVCA---LYFLDVYTEWDKADDEEDDLDDDDDGC 230
>06_02_0066 -
11081446-11081544,11081639-11081846,11083122-11083257,
11083339-11083541,11083616-11083765,11083848-11083964,
11084623-11085119
Length = 469
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 284 VKSVTVRSSVLSSESKWIENASKWQSQRIIQIITK 180
V SVT + SS K ENA K Q +R++Q K
Sbjct: 411 VSSVTTTRELESSLQKAYENAIKSQIERLMQAACK 445
>01_05_0410 +
21914995-21915168,21915268-21915353,21915446-21915656,
21915869-21915998,21916740-21916924,21917014-21917145,
21917329-21917433
Length = 340
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 84 TFDSLKILDPCQGWIRAWSSLAF*Y-HFCELCGFGYDLYDSL 206
TF L ++ CQGW + ++ L+ Y G+ YD +
Sbjct: 280 TFQGLALIIRCQGWRQLFAGLSLNYVKVVPSVAIGFTTYDMM 321
>08_01_0083 - 604175-605776
Length = 533
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 208 LCHFDAFSIHLDSEDRTEDLTVT 276
L F F+ L +E+RT+DLTVT
Sbjct: 84 LALFHPFTGRLVAEERTDDLTVT 106
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 6/25 (24%)
Frame = +3
Query: 72 PSCKT------FDSLKILDPCQGWI 128
P+C+T F+S+K+L PC+ W+
Sbjct: 1448 PNCRTEKLYSYFESIKLLFPCEQWM 1472
>01_01_0827 +
6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 284 VKSVTVRSSVLSSESKWIENASKWQSQRIIQIITKTAKLTEMVSKSQG 141
+++ T S+V+SSE + + +++ I+ A LTE+V S G
Sbjct: 32 IETQTRTSAVVSSEKESANSFVPHNGTGLVERISNDAGLTEVVGSSAG 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,301,744
Number of Sequences: 37544
Number of extensions: 152688
Number of successful extensions: 498
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -