Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L13
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83107-7|CAB05501.2|  537|Caenorhabditis elegans Hypothetical pr...    31   0.37 
AF003136-6|AAK21375.2|  384|Caenorhabditis elegans Hypothetical ...    29   0.85 
Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z81070-5|CAB02999.2|   84|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U80029-12|AAB37591.1|  456|Caenorhabditis elegans Hypothetical p...    26   7.9  

>Z83107-7|CAB05501.2|  537|Caenorhabditis elegans Hypothetical
           protein F32A7.6 protein.
          Length = 537

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 253 GRNVVTN-FVRNHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPY 110
           GRN   N FV    NGG+ G+N  +D +   + TL F +   SG  A Y
Sbjct: 264 GRNGKGNIFVWASGNGGVNGDNCAYDGYVSNEYTLSFGVIDASGAPAAY 312


>AF003136-6|AAK21375.2|  384|Caenorhabditis elegans Hypothetical
           protein F28B3.3 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 252 PNLFEMRVNGVIIFTFLRFSSRYHSKKQKFDFANSTVIGRPNS 380
           P + ++RVNG II       S Y+S  +  D  N   +GR +S
Sbjct: 90  PQITKLRVNGRIIRVTAIRQSAYYSSSEDEDSVNGGTLGRKDS 132


>Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical
           protein F43A11.4 protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 192 FSPGIPPLEWFLTKFVTTFLPNLFEMRVNGVIIFTFLR 305
           FSP   PL WF    +T  +  +F +  N +II +F+R
Sbjct: 3   FSPDADPLNWFAASVMT--INGVFGITCNTLIIASFIR 38


>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
           protein Y76B12C.7 protein.
          Length = 1454

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 371 PADDCAICKIELLFFAVIPTRES*KRKDDYPIDSHLKQIGQKCGN 237
           P++ CA C +     A++P  E+ KR   Y I   LKQI  +  N
Sbjct: 146 PSNRCAACLVYGKHIAILPFHENSKRIHSYVIP--LKQIDPRLDN 188


>Z81070-5|CAB02999.2|   84|Caenorhabditis elegans Hypothetical
           protein F26E4.6 protein.
          Length = 84

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -3

Query: 214 NGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQ 92
           N G     LPF + N++      + +   G  AP+++  +Q
Sbjct: 38  NDGWASARLPFHVTNKWGFAAKAVTFLAIGFWAPFIVVEYQ 78


>Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical
           protein H12I19.4 protein.
          Length = 659

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 365 DDCAICKIELLFFAVIPTR 309
           DD AIC I +LF  ++P +
Sbjct: 238 DDVAICTIAILFLCILPAK 256


>U80029-12|AAB37591.1|  456|Caenorhabditis elegans Hypothetical
           protein T20D4.6 protein.
          Length = 456

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = -3

Query: 379 EFGRPMTVLFAKSNFCFLL*YLLENRRNVKMITPL-TRISNKLGRNVVTN-FVRNHSN-- 212
           E  RP  V  AK   C  +  LL+       +TP+ T+ S  LG     N F+  + N  
Sbjct: 135 EVDRPWRVDKAKK-MCITVSPLLDLNVIPHSLTPINTQASENLGCCCFKNGFLEMNVNIP 193

Query: 211 --GGIPGENLPFDIH 173
             G +PGE +P +IH
Sbjct: 194 KTGFVPGETVPLNIH 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,652,328
Number of Sequences: 27780
Number of extensions: 170401
Number of successful extensions: 376
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)