Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L09
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical pr...   194   7e-50
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    43   2e-04
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF016440-4|AAB65902.1|  157|Caenorhabditis elegans Adaptin, smal...    28   7.4  
Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical p...    27   9.8  
U55363-9|AAA97967.1|  184|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical
           protein F59E10.3 protein.
          Length = 184

 Score =  194 bits (472), Expect = 7e-50
 Identities = 82/157 (52%), Positives = 127/157 (80%), Gaps = 1/157 (0%)
 Frame = -3

Query: 562 TLYIVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHR-ANAEIIMLDGLT 386
           +LY +KG+ ILD +GNR+LAKYYD+    T KEQKAFEK+LF+KT R  +A+I++LDG+T
Sbjct: 10  SLYSIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRNTSADILLLDGVT 69

Query: 385 CVYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFD 206
           C+Y+SNVDL+FYV+GS+ ENEL L + L  LY++VS++LR+N+E++ L++++D +ML  D
Sbjct: 70  CLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIMLIID 129

Query: 205 EICDGGVILDADPTSIVSRAALRTEDVPLGEQTVAQV 95
           EICD G+I++ D  ++V R AL++++V   +Q+V+Q+
Sbjct: 130 EICDEGIIMETDAQAVVQRTALKSDEVSFSDQSVSQI 166


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
 Frame = -3

Query: 550 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRANAE-IIMLDGLTCVYK 374
           + G+ ILD +GN ++++ Y  DV  +  E+  F   L  K    +A  +++  G++  Y 
Sbjct: 3   ISGLFILDLKGNVVISRNYRGDVDMSCIEK--FMPLLVEKEDEGSASPVLVHQGISYTYI 60

Query: 373 SNVDLFFYVMGSSHENELILQSVLNALYESVSLLLR--RNMERRVLMENLDAVMLAFDEI 200
             ++++   +   + N ++   VL+ALY+ V +     + +E   + +N   +   FDE+
Sbjct: 61  KYMNVYLVTISKKNTNVIL---VLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEM 117

Query: 199 CDGG 188
            D G
Sbjct: 118 LDFG 121


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 171 SASNITPPSQISSKASITASKFSMRTLRSMFLLSSKLTDS 290
           S S IT P  +  +  +TAS  S +  +S+ ++ SKLT S
Sbjct: 517 SLSIITSPKALIGEKCLTASNKSSKIDKSLGMIDSKLTKS 556


>AF016440-4|AAB65902.1|  157|Caenorhabditis elegans Adaptin, small
           chain (clathrinassociated complex) protein 1 protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 22/95 (23%), Positives = 38/95 (40%)
 Frame = -3

Query: 391 LTCVYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLA 212
           L  VYK    L+F      ++NELI   V++   E +        E  ++  N +     
Sbjct: 55  LKVVYKRYASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIF-NFEKAYFI 113

Query: 211 FDEICDGGVILDADPTSIVSRAALRTEDVPLGEQT 107
            DE    G I +     ++   A+  +D+   E+T
Sbjct: 114 LDEFLLAGEIQETSKKQVLK--AIAAQDLIQEEET 146


>Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical
           protein Y57G11C.17 protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 300 MHSTSLLVCC*EGTW-SGGSSWRTWMLLCLPSMRSATAV 187
           ++S S+LV     TW +GGS W  W LLC+  +  AT +
Sbjct: 129 LYSFSVLVIV--ATWLTGGSKWTPW-LLCIVFIVRATQI 164


>U55363-9|AAA97967.1|  184|Caenorhabditis elegans Hypothetical
           protein ZC404.1 protein.
          Length = 184

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -3

Query: 259 MERRVLMENLDAVMLAFDEICDGGVILDADPTSIVSRAALRTEDVPLGEQTVAQ 98
           +ERR ++   D   L   E    GVI+  +P   V R  +RTEDV    +TVA+
Sbjct: 103 VERREVVTARDLARLMPPE---QGVIVVCNPERSVCRIKIRTEDVRKEVETVAK 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,227,999
Number of Sequences: 27780
Number of extensions: 346497
Number of successful extensions: 826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)