Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L08
         (724 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    24   1.4  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   3.3  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    21   7.6  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = -2

Query: 561 GYNWRRICGLRSSS---DESIWRSTCAQGP 481
           G+ W    GL + S   D+  WRS C Q P
Sbjct: 313 GWQWGPDAGLGNLSVCIDQQPWRSYCIQPP 342


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 131 MPKARHLTFTVTFMKSCATDQPTASV 208
           MP+AR +T  + F  +     P+ASV
Sbjct: 1   MPRARLVTLWLAFNLASIAQDPSASV 26


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/29 (27%), Positives = 11/29 (37%)
 Frame = -1

Query: 202 CCGLIGCTTLHKRNRKREMTSFWHLSSVC 116
           CCG  GC        + +   F+H    C
Sbjct: 62  CCGPFGCLVGTPETLRCQREGFFHEREPC 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,084
Number of Sequences: 336
Number of extensions: 3717
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)