Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L08
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    29   0.51 
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    29   0.89 
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    27   3.6  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   3.6  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    26   4.7  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   6.3  

>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 584 PRECVFLPPSHGSL-ERLHILSFPRLEVGQLGKHWLHPXDP 703
           P + V L P+  S  E+LH   FP L V +    WLH   P
Sbjct: 267 PEKQVTLDPNDPSFYEQLHDKYFPNLPVDEKQMQWLHDPSP 307


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
 Frame = -3

Query: 482 PGQAAARLMKVFNVGLDSQLN--LLFAHSQTELTFHPEP*IAFSTRMVKQYL**RSLRNS 309
           P    A++  V+N GLDS L+   L+  S + L       +A  +RM +     +  R S
Sbjct: 180 PTHVLAKVPLVYNFGLDSPLDNPKLYKLSLSRLA------LAVHSRMSQS----KDARVS 229

Query: 308 YCVT*TPTRRDKGSVKCQSIGHEFATELRSLSIGLMLWADRLHNS 174
            C+  T + ++    K Q I H   T+ R ++I ++L ++RL++S
Sbjct: 230 GCLVDTSSIQENAE-KYQDILHSIITDFR-INIIIVLGSERLYSS 272


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 268 PSNANRSVMSLQPSYGHYQSD*CCGLIG 185
           P   N +VM +   YG   SD C GLIG
Sbjct: 256 PVPYNNTVMVMPNLYGDIVSDMCAGLIG 283


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 493 TSATPDTFIR*TSESTDPPP 552
           T + P TF+R  S STD PP
Sbjct: 405 TPSKPSTFVRPHSSSTDSPP 424


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 263  KCQSIGHEFATELRSL 216
            KCQS+  EF TELR L
Sbjct: 962  KCQSMEREFKTELRKL 977


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +1

Query: 457 ISLAAA*PGSLRTSATPD--TFIR*TSESTDPPPVVANFTWQVTST--*MCFSTAFPRVP 624
           I++ A  P  + +S+T +  T     S ST PP + +     VTST      +T    V 
Sbjct: 160 IAVLAVLPQPISSSSTYNSTTSSYHNSTSTPPPTITSTKASTVTSTEATTVTTTTAVTVT 219

Query: 625 GTSTYSVFSST*GRSARKTLAS 690
            T TY+V ++  G +   T AS
Sbjct: 220 ATETYTVTATNGGSTITSTGAS 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,327
Number of Sequences: 5004
Number of extensions: 57142
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)