Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L08
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45...    31   0.93 
09_04_0663 + 19299275-19299479,19300842-19300948,19301222-193014...    31   1.2  
10_01_0005 - 60264-61205                                               29   4.9  
09_06_0086 - 20763085-20763162,20763233-20763286,20763287-207639...    29   4.9  
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294...    28   6.5  

>11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-459581,
            459924-460183,461834-461918,462587-462919,463053-463137,
            463289-463374,463455-463556,463656-463795,464332-464658,
            464778-465389,465502-465586,465587-465682,465762-466115,
            466212-466322,466426-466509,467086-467164,467742-467899,
            468034-468150,468240-468398,468475-468557,469098-469200,
            470784-471080
          Length = 1899

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 644  TEYVDVPGTR-GKAVEKHIHVDVTCHVKLATTGGGSVDSEVHLMKVSGVALVRKDPGQAA 468
            T+Y+ VPG R GK VEK + ++    +K+   G     ++   MK  G A+V KD  + A
Sbjct: 1621 TKYIVVPGKRVGKEVEK-MPIETPKPLKIKKGGFKKKWNKRKFMKKDGQAVVEKDEARVA 1679


>09_04_0663 +
           19299275-19299479,19300842-19300948,19301222-19301413,
           19301933-19302043,19302374-19302673
          Length = 304

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = -2

Query: 663 TSSRGKDRICRRSRDPWEGGRKTHSRGRYLPREIGYNWRRICGLRSSSDESIWRSTCAQG 484
           ++++ K  +C++  +  EG +KT   G  LP EI   W  I  L +  D +  R+TC   
Sbjct: 74  SAAKRKGSLCQQVANS-EGNKKTRYSGLDLPEEI---WCHIHSLMAFKDAA--RATCVSR 127

Query: 483 P--RSGRCQANESFQRGI 436
              RS +C  N  F  GI
Sbjct: 128 AFHRSWQCHPNLIFCIGI 145


>10_01_0005 - 60264-61205
          Length = 313

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +3

Query: 252 RLAFDGAFVAPGGCLSDTVTIAKRALSQVLLHHSSTEGDLRFRVESELSLRVGEQQVQLR 431
           +L  DG FV  G   S    +  RA+ Q + H+S        ++ +E+S  +GE  V + 
Sbjct: 244 QLGCDGVFVGSGIFKSGDPALRARAIVQAVTHYSDP------KILAEVSSGLGEAMVGIN 297

Query: 432 VQS---HVENF 455
           +     HVE F
Sbjct: 298 LSDPKIHVERF 308


>09_06_0086 -
           20763085-20763162,20763233-20763286,20763287-20763975,
           20764173-20764324,20764404-20764604,20764920-20765064,
           20765552-20765588,20765880-20765965,20766093-20766329,
           20766501-20766609,20767025-20767135
          Length = 632

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 415 NKFNCESNPTLKTFISLAAA*PGSLRTSA--TPDTFIR*TSESTDP 546
           NK N  S PT+K+F     + PG   T++  TP   +    E  DP
Sbjct: 461 NKHNLSSQPTIKSFFQQPKSKPGDSSTNSIVTPPDTLHGMDELHDP 506


>03_05_0843 +
           28126480-28127007,28127092-28127457,28129388-28129487,
           28130266-28130546,28130643-28130705,28131276-28131431,
           28131913-28132080,28132158-28132298,28132714-28132840,
           28132888-28132994,28134142-28134372,28134446-28134559,
           28135091-28135261
          Length = 850

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 651 GKDRICRRSRDPWEGGRKTHSRGRYLPRE-IGYNWRRICGLRSSSDE 514
           G+D + R SR         HS G +LPR+ IG    ++  +R S  +
Sbjct: 140 GEDSLRRLSRPSTSSSSSAHSNGHHLPRKPIGEIHLKVSSVRESRSD 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,533,597
Number of Sequences: 37544
Number of extensions: 422481
Number of successful extensions: 1078
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)