Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L08
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19157-1|CAB63418.2|  733|Caenorhabditis elegans Hypothetical pr...    29   3.4  
D86922-1|BAA13180.1|  733|Caenorhabditis elegans cyclic nucleoti...    29   3.4  
AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    28   5.9  

>Z19157-1|CAB63418.2|  733|Caenorhabditis elegans Hypothetical
           protein ZC84.2 protein.
          Length = 733

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +3

Query: 294 LSDTVTIAKRALSQVLLHHSSTEGDLRFRVE 386
           L++ V + +  ++++++ HSSTEG L  R+E
Sbjct: 641 LNNAVKVLQTRMARLIVEHSSTEGKLMKRIE 671


>D86922-1|BAA13180.1|  733|Caenorhabditis elegans cyclic
           nucleotide-gated channel protein.
          Length = 733

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +3

Query: 294 LSDTVTIAKRALSQVLLHHSSTEGDLRFRVE 386
           L++ V + +  ++++++ HSSTEG L  R+E
Sbjct: 641 LNNAVKVLQTRMARLIVEHSSTEGKLMKRIE 671


>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 478 PGSLRTSATPDTFIR*TSESTDPPPVVANFTWQVTST*MCFSTAFPRVPGTSTYSV 645
           P +  ++ TP      T+E++  P + +N T  +TST    +++  R   T+T SV
Sbjct: 301 PSTTTSTTTPKPSSPSTAEASTTPVLTSNLTSALTSTSPLLASSTERTATTATSSV 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,113,880
Number of Sequences: 27780
Number of extensions: 336285
Number of successful extensions: 714
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)