Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L08
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 310 VTVSLKHPPGATKAPSNANRSVMSLQP 230
           ++VS+  PP A   P N N   +   P
Sbjct: 760 LSVSIPPPPSAQNVPQNTNSQAIPRIP 786


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 629 VPGTRGKAVEKHIHVDVTCHVKLATTGGGSVDSEVH 522
           VPG  G    K   V    H   A + GG++++ ++
Sbjct: 337 VPGDHGDHAPKQTEVRFKVHDPKAHSKGGTLENTIN 372


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 629 VPGTRGKAVEKHIHVDVTCHVKLATTGGGSVDSEVH 522
           VPG  G    K   V    H   A + GG++++ ++
Sbjct: 337 VPGDHGDHAPKQTEVRFKVHDPKAHSKGGTLENTIN 372


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 71  NLI*FFN*VDNXPKRQYSLNLL 6
           NL+ +F  +   PK Q  LNLL
Sbjct: 831 NLLRYFASIATNPKEQAQLNLL 852


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,452
Number of Sequences: 438
Number of extensions: 4172
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)