Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_L06
(494 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical... 176 6e-45
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 29 1.9
AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical ... 28 3.2
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ... 28 4.3
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 27 5.7
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass... 27 7.5
AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical ... 27 7.5
AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical ... 27 7.5
U97001-4|AAM45354.1| 86|Caenorhabditis elegans Hypothetical pr... 27 9.9
U97001-3|AAB52258.2| 449|Caenorhabditis elegans Hypothetical pr... 27 9.9
U40029-1|AAA81123.3| 360|Caenorhabditis elegans Serpentine rece... 27 9.9
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 27 9.9
AL032630-6|CAA21562.1| 181|Caenorhabditis elegans Hypothetical ... 27 9.9
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 27 9.9
AC006656-1|AAF39881.1| 592|Caenorhabditis elegans Hypothetical ... 27 9.9
>AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical
protein Y105E8A.16 protein.
Length = 117
Score = 176 bits (429), Expect = 6e-45
Identities = 78/101 (77%), Positives = 95/101 (94%)
Frame = -3
Query: 309 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 130
HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP+RMPTK+LRITTRKTPCGEGSKTW
Sbjct: 17 HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76
Query: 129 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 7
DRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV++EVT AD
Sbjct: 77 DRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTRAD 117
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 267 LEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 145
+E V A + G KK+ + K + PTK +T++ P E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399
>AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical
protein W03F11.1 protein.
Length = 235
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 349 QRHRETPGRGLPYPPHQDHSYFSQCA 272
Q HR PG +PYP DH+ F +C+
Sbjct: 84 QGHRCYPGTRIPYP--HDHTMFLECS 107
>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
protein F28B3.1 protein.
Length = 1539
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 336 KPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKK 226
+ +A+ SP HRI +TS+N C+ L+ A++
Sbjct: 943 RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = -2
Query: 391 PEFNKQHGSRCSVRQRHRETPGRGL-PYPPHQDHSYF 284
P + H R R H G P+PPH H +F
Sbjct: 399 PPHHHHHDGRSPSRHGHHHHHHHGCRPFPPHHGHHHF 435
>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
assigned gene nameprotein 158 protein.
Length = 1003
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 269 ERTL-REVRVILMRWIGETSAWGFSMSLPDTTA 364
ERTL E R ++MR + + S G S+SLP A
Sbjct: 838 ERTLLMEERTMMMRDLQKVSGGGMSLSLPPANA 870
>AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical
protein C54E4.2a protein.
Length = 226
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 372 MAAAVVSGKDIEKPQAEVSPIH 307
++AA +S +D+EKP + P+H
Sbjct: 14 ISAAYISSEDLEKPSSADKPVH 35
>AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical
protein C54E4.2b protein.
Length = 234
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 372 MAAAVVSGKDIEKPQAEVSPIH 307
++AA +S +D+EKP + P+H
Sbjct: 14 ISAAYISSEDLEKPSSADKPVH 35
>U97001-4|AAM45354.1| 86|Caenorhabditis elegans Hypothetical
protein K08B12.2b protein.
Length = 86
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 72 FQRESVGRSLSCGFASENDPRSLNLHRKEFSG 167
FQRE + L+CG AS + R+L + E G
Sbjct: 37 FQREQLNGGLTCGGASRSSNRTLFCRKCEGHG 68
>U97001-3|AAB52258.2| 449|Caenorhabditis elegans Hypothetical
protein K08B12.2a protein.
Length = 449
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 72 FQRESVGRSLSCGFASENDPRSLNLHRKEFSG 167
FQRE + L+CG AS + R+L + E G
Sbjct: 37 FQREQLNGGLTCGGASRSSNRTLFCRKCEGHG 68
>U40029-1|AAA81123.3| 360|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 39 protein.
Length = 360
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 96 SLSCGFASENDPRSLNLHRKEFSGW*YAGSWLACGLGPLHAASVSWL 236
SL+ F ++ + RSL L +K +A + CG+G L A++ W+
Sbjct: 235 SLAIRFQAKENARSLQLAKKVVL---FAAFAILCGMGLLILAAMHWI 278
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 391 PEFNKQHGSRCSVRQRHRETPGRGL-PYPPHQDHSYF 284
P+ +QH ++ + Q H PG G P PP Q Y+
Sbjct: 654 PQQQQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYY 690
>AL032630-6|CAA21562.1| 181|Caenorhabditis elegans Hypothetical
protein Y62H9A.6 protein.
Length = 181
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 202 SPHANQDPAYHHPENSLR*RFKDLGSFSDANPQES 98
SP AN +P+Y P NS + D S S ++ +S
Sbjct: 30 SPPANDNPSYSAPANSDNRLYYDYSSRSSSSSSDS 64
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 391 PEFNKQHGSRCSVRQRHRETPGRGL-PYPPHQDHSYF 284
P+ +QH ++ + Q H PG G P PP Q Y+
Sbjct: 654 PQQQQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYY 690
>AC006656-1|AAF39881.1| 592|Caenorhabditis elegans Hypothetical
protein H12I13.1 protein.
Length = 592
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 282 RNVRSLEKVC-ADLINGAKKQKLRVKGPVRMPTKILRITTRKT 157
R+ +S KVC L GAKK++ + KIL IT KT
Sbjct: 364 RDNKSSNKVCRTSLSGGAKKKRKERNARSEVGDKILGITETKT 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,108,979
Number of Sequences: 27780
Number of extensions: 269179
Number of successful extensions: 628
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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