Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L04
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   4.7  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    25   6.2  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   6.2  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   8.3  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 361  NCLRACESSRKTETGVKKIIRLLAGGSCRGLFDR 462
            +CL++ E +R +E   +K++RL+      GLF R
Sbjct: 1125 SCLKSLEEARHSENNFQKMVRLI---DLIGLFSR 1155


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +3

Query: 336 IHTYDRIVELPPSLRIF-KENGNRSKE 413
           +HTY  +    PSL  F  EN NR  E
Sbjct: 20  VHTYRTLTSATPSLEFFSNENTNRLSE 46


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = -3

Query: 509 NHPALLPNQYAPDACTRS---NRPRQLPPARSL 420
           NHP   P  Y P  C  +   + P QL PA ++
Sbjct: 205 NHPYSSPTSYPPPLCPATYCPSNPPQLAPATAI 237


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 336 IHTYDRIVELPPSLRIFKENGNRSKENN 419
           ++ Y RI+  PP L     NG+ S ENN
Sbjct: 282 VYQYRRIISPPPGLSSMDSNGS-SIENN 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,979
Number of Sequences: 5004
Number of extensions: 44780
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)