Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L04
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   6.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   6.8  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   6.8  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 387 KENGNRSKENNKTPRR 434
           K+NGNR  +N +   R
Sbjct: 504 KQNGNRQNDNKRNGNR 519



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 387 KENGNRSKENNKTPRR 434
           K+NGNR  +N +   R
Sbjct: 469 KQNGNRQNDNKQNGNR 484



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 387 KENGNRSKENNKTPRR 434
           K+NGNR  +N +   R
Sbjct: 479 KQNGNRQNDNKQNGNR 494


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 503 PALLPNQYAPDACTRSNRPRQLPPAR 426
           PA L  +  P+A   +NRP  +P  R
Sbjct: 29  PARLRREAKPEAEPGNNRPIYIPQPR 54


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 387 KENGNRSKENNKTPRRGQLPGSV*PSTS 470
           +E+GN+ K+N +    G  P    P  S
Sbjct: 207 EEHGNKKKKNKEDEDDGATPRKAPPQLS 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,688
Number of Sequences: 438
Number of extensions: 3203
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)