Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_L02
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   0.77 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.2  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   7.2  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -1

Query: 237 EK*KNPVTFLAFK*EFTYSHTFELSYIYNNYKQKENNCKRN 115
           E+ K P    +    + YS+    +  YNNY    NN   N
Sbjct: 307 ERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNN 347


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 191 NSYLNAKNVTGFFYFSNKYCFLKIKKIRNVKKTLTI--LNFTV 313
           N+Y N KN    +   +  C+L++ K  N  K  ++  +N T+
Sbjct: 102 NNYWNTKNCVNPYDRDSLSCWLQMTKHHNFIKVCSVNDVNMTI 144


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 191 NSYLNAKNVTGFFYFSNKYCFLKIKKIRNVKKTLTIL 301
           N   NA ++T    F+NKYC      I +    +T++
Sbjct: 92  NKNCNAGSLTVKKNFANKYCGNITLNIESTSNKMTVI 128


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 479 NTFYWWLHVKRSQ 517
           N FYW+ ++ RS+
Sbjct: 439 NVFYWFAYLSRSE 451


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 168 LSYIYNNYKQKENNCKRNAC 109
           +S + NNY    NN K+  C
Sbjct: 82  ISSLSNNYNYNNNNYKKLYC 101


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 168 LSYIYNNYKQKENNCKRNAC 109
           +S + NNY    NN K+  C
Sbjct: 82  ISSLSNNYNYNNNNYKKLYC 101


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 168 LSYIYNNYKQKENNCKRNAC 109
           +S + NNY    NN K+  C
Sbjct: 82  ISSLSNNYNYNNNNYKKLYC 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,599
Number of Sequences: 438
Number of extensions: 2817
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)