Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_K23
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    48   6e-06
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    36   0.019
06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091...    32   0.42 
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547...    29   3.0  
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568...    29   3.0  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 30/120 (25%), Positives = 60/120 (50%)
 Frame = -1

Query: 591 EGFAKLFRKLSDDSWEKTIGLXXHVTKRGGKMDFXSHTTLKGDKGSNYTVEVGHEIGALA 412
           +GFAK F++ SD+  +    L  +   RGG++   S  T   +       E G  + A+ 
Sbjct: 124 KGFAKFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLTEFDH---PEKGDALYAME 180

Query: 411 KALDTQKQXAERIFFIHREVTXXSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 232
            AL  +K   E++  +H      +   +D ++T ++E EF+ +Q + I+ ++ + + L+R
Sbjct: 181 LALALEKLVNEKLHNLH----SVASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRR 236


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 29/120 (24%), Positives = 55/120 (45%)
 Frame = -1

Query: 591 EGFAKLFRKLSDDSWEKTIGLXXHVTKRGGKMDFXSHTTLKGDKGSNYTVEVGHEIGALA 412
           +GFAK F++ SD+  +    L  +   RGG++   S  T           E  H      
Sbjct: 156 KGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIVT--------PLTEFDHP--EKG 205

Query: 411 KALDTQKQXAERIFFIHREVTXXSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 232
            AL  +   A  I+  +  V   +   +D ++T ++E EF+ +Q + I+ ++ + + L+R
Sbjct: 206 DALYGELLSACPIYVFYSMV---ASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRR 262


>06_03_1127 -
           27807784-27807963,27808362-27808460,27809076-27809165,
           27809272-27809404,27809539-27809624,27810028-27810099,
           27810329-27810415,27810485-27810616,27810718-27810789,
           27810957-27811037,27811871-27811963,27812298-27812465
          Length = 430

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 315 TQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVYLFDEYL 169
           T Y     +S     +  LAGHT+D+     E  G++L LA  L D+ L
Sbjct: 272 TYYKTASLISNSCKAVAILAGHTADVSMLAYE-YGRNLGLAFQLIDDVL 319


>03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,
            5478055-5478132,5478227-5478280,5478466-5478650,
            5478781-5480374,5480506-5480700,5480753-5480904,
            5481213-5481486,5481597-5481733,5482219-5482258,
            5482773-5483261,5483605-5484168
          Length = 1477

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 214  VVLGYEPLEVR-GVTREATNRIGLLTHEFLLDVLSDLGIVEEVAVXSDFPVDE 369
            +V+ ++ +E   G+TRE   R+ +L      + +S +GIV  + V   FP ++
Sbjct: 943  IVIHFQDIESELGLTREQLIRMAMLLGSDYTEGISGIGIVNAIEVAHAFPEED 995


>01_06_1696 +
           39256171-39256393,39256513-39256595,39256692-39256831,
           39256882-39257398,39257518-39257565,39257832-39258006,
           39258122-39258234,39258329-39258425,39258579-39258798,
           39258985-39259144,39259233-39259646
          Length = 729

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 211 PVVLGYEPLEVRGVTREATNRIG-LLTHEFLLDVLSDLGIVEEVAVXSDFPVDEENPLGX 387
           P  LG +P     V +   + +G ++       VL  L  +    V SD+ ++E+NPLG 
Sbjct: 453 PAALGLDPTVANSVHQVINSSLGSVIPRNLQKSVLEGLFSIGRAQV-SDYILNEKNPLGS 511

Query: 388 LLL 396
           L L
Sbjct: 512 LRL 514


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,519,107
Number of Sequences: 37544
Number of extensions: 252912
Number of successful extensions: 531
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)