Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_K23
(618 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 38 0.008
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 36 0.023
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 32 0.29
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 30 1.2
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 29 3.5
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 28 4.6
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 28 4.6
Z66521-10|CAH10788.1| 359|Caenorhabditis elegans Hypothetical p... 27 8.1
Z66521-9|CAA91402.1| 367|Caenorhabditis elegans Hypothetical pr... 27 8.1
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 8.1
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 37.5 bits (83), Expect = 0.008
Identities = 31/117 (26%), Positives = 51/117 (43%)
Frame = -1
Query: 582 AKLFRKLSDDSWEKTIGLXXHVTKRGGKMDFXSHTTLKGDKGSNYTVEVGHEIGALAKAL 403
AK F++ SD+ E L RGG++ + D E G + A AL
Sbjct: 48 AKFFKEQSDEEREHATELMRVQNLRGGRVVLQDIQKPEND-------EWGTALKAFEAAL 100
Query: 402 DTQKQXAERIFFIHREVTXXSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 232
+K E + +H +D A +T +IEE+++ +Q +I A ++LKR
Sbjct: 101 ALEKFNNESLLKLHSTAGNHND----AHLTDFIEEKYLDEQVKSINEFARMVANLKR 153
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 35.9 bits (79), Expect = 0.023
Identities = 28/117 (23%), Positives = 53/117 (45%)
Frame = -1
Query: 582 AKLFRKLSDDSWEKTIGLXXHVTKRGGKMDFXSHTTLKGDKGSNYTVEVGHEIGALAKAL 403
AK F++ SD+ L RGG++ + + D E G + A AL
Sbjct: 48 AKFFKEQSDEERGHATELMRIQAVRGGRVAMQNIQKPEKD-------EWGTVLEAFEAAL 100
Query: 402 DTQKQXAERIFFIHREVTXXSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 232
++ + +H ++ +DA +T YI+E+++ +Q +I A H +++KR
Sbjct: 101 ALERANNASLLKLH----GIAEQRNDAHLTNYIQEKYLEEQVHSINEFARHIANIKR 153
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 360 REVTXXSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKD 205
+ V ++LH Q EE F +Q TIR A +DLK+F + D
Sbjct: 41 KSVLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKKFFRKEASTD 92
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = -1
Query: 456 SNYTVEVGHEIGALAKALDTQKQXAERIFFIHREVTXXSDLLHDAEITQYIEEEFVSQQ- 280
S TVE H++ ++A ++ T + E + FI + + L+ A T + E S++
Sbjct: 636 STRTVESKHDVTSMASSVSTWHEEIEALAFIDGDADEKAMLVQPALKTGWAAMEQASKKD 695
Query: 279 ADTIRSLAGHTSDLKRFITENNG 211
A+ IRS + + +++ +G
Sbjct: 696 AEVIRSHVDKLASIAEQLSKRHG 718
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
F21G4.2 protein.
Length = 1573
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -1
Query: 357 EVTXXSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 208
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -1
Query: 357 EVTXXSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 208
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -1
Query: 306 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 187
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -1
Query: 306 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 187
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>Z66521-10|CAH10788.1| 359|Caenorhabditis elegans Hypothetical
protein W02B12.12b protein.
Length = 359
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 277 GLLTHEFLLDVLSDLGIVEEVAVXSDFPVDEENP 378
G++ + FL DV S LG+V V V + P DE+ P
Sbjct: 264 GIVYNPFLSDVWS-LGVVGFVMVTNRMPFDEKKP 296
>Z66521-9|CAA91402.1| 367|Caenorhabditis elegans Hypothetical
protein W02B12.12a protein.
Length = 367
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 277 GLLTHEFLLDVLSDLGIVEEVAVXSDFPVDEENP 378
G++ + FL DV S LG+V V V + P DE+ P
Sbjct: 264 GIVYNPFLSDVWS-LGVVGFVMVTNRMPFDEKKP 296
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 611 TTTRRTGKDSRSSSGNYRTIRGRKPLVSXSTSLRGVGRWTSXVTP 477
TTT T ++S ++ + +P+V+ STS +G+ T+ TP
Sbjct: 286 TTTVTTAQNSTWAATTTASNTTTQPVVTTSTSTQGISTTTAQATP 330
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,371,725
Number of Sequences: 27780
Number of extensions: 218087
Number of successful extensions: 567
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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