Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_K22
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   2.7  
SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.2  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   8.2  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 635 AVSVRPQNPILWQTPFAPNSS 697
           A S  P NP  WQ P AP S+
Sbjct: 430 ASSAAPSNPAPWQQPAAPQSA 450


>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 119 NVIATVLSHRRGLLDDRISQKKTQIL 196
           N++  V SH RG+ + R  QK+ Q++
Sbjct: 51  NMVRNVQSHNRGINNRRRDQKRKQLI 76


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 652 WSDRNRIRAHVPREEELTRTCSIYNI 575
           WS  +++R  V R  E   +CSI NI
Sbjct: 29  WSQIHKVRKLVDRSIERMESCSIINI 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,457
Number of Sequences: 5004
Number of extensions: 50646
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)