Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_K21
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 28 2.4
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219... 28 2.4
10_08_1059 + 22618999-22619206,22620386-22620416,22620440-226209... 27 4.2
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447 27 4.2
05_01_0128 + 866817-866859,867789-867874,868142-868231,868337-87... 27 5.6
08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511... 27 7.3
06_03_0859 - 25473784-25473798,25473862-25473923,25474251-254743... 27 7.3
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394 27 7.3
02_03_0193 + 16211395-16212729,16212894-16213401,16213712-16214112 27 7.3
10_01_0302 + 3320730-3321710 26 9.7
06_03_0743 + 24069752-24070483,24071890-24072345 26 9.7
05_01_0301 - 2356880-2357959 26 9.7
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 28.3 bits (60), Expect = 2.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 218 EPSLRSTPGAIHHWQVHSGNS 156
EP++R PG W HSG+S
Sbjct: 138 EPTIRGIPGQEARWMTHSGSS 158
>12_01_0292 +
2193309-2193338,2193565-2193640,2193744-2195203,
2195479-2195505,2195794-2196024,2196523-2196692,
2197278-2197421,2198036-2198083,2198503-2198566
Length = 749
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 312 AVTYSSVPISIDLWS-TITTLSTTPNYSAKGLRTFI 208
+ T S+ P WS ++TT+ +TPNY K F+
Sbjct: 635 STTASACPDHRTAWSLSLTTIDSTPNYRGKSCVVFV 670
>10_08_1059 +
22618999-22619206,22620386-22620416,22620440-22620974,
22621065-22621319
Length = 342
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = +1
Query: 133 WCESYHRPEFPEWTCQWWMAPGVERNEGSQPFCGII 240
W + + R F W ++AP + GS F G +
Sbjct: 176 WAQDHFRTTFVVWIVGMFLAPKMSHKSGSNDFWGAL 211
>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
Length = 309
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 262 HNAKYDAKLFRKRVENLHYVL 200
HNAK+ +++RK E HY+L
Sbjct: 281 HNAKFPTEIYRKGQEYKHYML 301
>05_01_0128 +
866817-866859,867789-867874,868142-868231,868337-870214,
870606-870795,870888-871483
Length = 960
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 177 ASPFREFWPMIRLTPPLPLTSLQGGIGFTFVNLRMKSERGNKLNYDVYI 31
+S R W ++LTPPLP+T I N+ +K + G ++ I
Sbjct: 665 SSKERMGWTELKLTPPLPVTKEDTSI-HNQDNIVLKDQEGRNQQVEIDI 712
>08_01_0576 -
5114636-5115151,5115254-5116183,5116898-5117614,
5119630-5119746,5119930-5120295,5121365-5121634
Length = 971
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 204 FYPRCHPPLASPFREFWPMIRLTPPLPLTSLQGG 103
F+P H L R F P + + PP + QGG
Sbjct: 690 FHPHPHSHLQETIRSFAPSMSVAPPQNIFHGQGG 723
>06_03_0859 -
25473784-25473798,25473862-25473923,25474251-25474345,
25475718-25475831,25476490-25476695,25476834-25476959,
25479516-25480178
Length = 426
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 380 QSHFDNETANHYISPRRCGDR 318
Q+H + TAN YIS R G R
Sbjct: 259 QTHSETRTANFYISDRNTGKR 279
>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
Length = 1456
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = -2
Query: 295 GTNINRPMVYHHNAKYDAKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTH 137
GT+ N+ ++ D KR+ ++HY+ +PS + + DK H
Sbjct: 242 GTDWNQEILKRIGGHRDKPSSTKRIRDIHYLTGSLPSAFCMLLVQMGGMDKNH 294
>02_03_0193 + 16211395-16212729,16212894-16213401,16213712-16214112
Length = 747
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 218 EPSLRSTPGAIHHWQVHSGNS 156
EP++R PG W H G+S
Sbjct: 11 EPTIRGIPGQETRWMTHGGSS 31
>10_01_0302 + 3320730-3321710
Length = 326
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 256 AKYDAKLFRKRVENLHYVLPQVPSTIGKSIQGILAYD-KTHTTASANITXRW 104
A A L + E + VLP++ + + G+LA+D + TAS + RW
Sbjct: 257 ADLSANLDDQLNELFYDVLPELSPAAREVLSGLLAFDPEKRLTASEALEHRW 308
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 243 PNYSAKGLRTFITFYPRCHPPLASPFREFWPMIRLTP 133
P Y+A + ++ PP + P RE P++ LTP
Sbjct: 33 PPYAASFSGLYSSYLHPPPPPSSPPIREALPLLSLTP 69
>05_01_0301 - 2356880-2357959
Length = 359
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 212 SLRSTPGAIHHWQVHSGNS 156
S S+PGA H W V+S +S
Sbjct: 154 SSSSSPGASHRWHVYSASS 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,171,924
Number of Sequences: 37544
Number of extensions: 209167
Number of successful extensions: 498
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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