Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_K17
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   196   2e-50
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   193   1e-49
04_03_0980 + 21406822-21409496,21410322-21410376                       29   2.7  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   4.8  
06_03_0543 + 21967787-21970261                                         29   4.8  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  196 bits (477), Expect = 2e-50
 Identities = 88/145 (60%), Positives = 112/145 (77%)
 Frame = -1

Query: 708 VISSRPFGQRAVXKFAAHTGXTPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPIT 529
           V S+RP+GQRAV KFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI 
Sbjct: 80  VQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIK 139

Query: 528 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 349
           E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR VL++RG +    +W
Sbjct: 140 ESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKW 199

Query: 348 DVVVDLFFYRDPEESEKDEQQAKEQ 274
           DV+VDLFFYRDPEE+++ E++A  Q
Sbjct: 200 DVMVDLFFYRDPEEAKEQEEEAPAQ 224


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  193 bits (470), Expect = 1e-49
 Identities = 86/141 (60%), Positives = 109/141 (77%)
 Frame = -1

Query: 708 VISSRPFGQRAVXKFAAHTGXTPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPIT 529
           V S+RP+GQRAV KFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI 
Sbjct: 80  VQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIK 139

Query: 528 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 349
           E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG +    +W
Sbjct: 140 ESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKW 199

Query: 348 DVVVDLFFYRDPEESEKDEQQ 286
           DV+VDLFFYRDPEE+++ E++
Sbjct: 200 DVMVDLFFYRDPEEAKEQEEE 220


>04_03_0980 + 21406822-21409496,21410322-21410376
          Length = 909

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +3

Query: 378 EASTLHVPTTTTSNQ*NGKTWCCMGW----QCPQI 470
           +A +LHV   +T     G  WCC+ W    +CP+I
Sbjct: 659 KAESLHVHDLSTITPLPGGQWCCLKWCRIERCPKI 693


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 166 TRCSSCFWSTPCPRRMVCPGTR*VEHN 86
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 417 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 328
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,312,106
Number of Sequences: 37544
Number of extensions: 407530
Number of successful extensions: 1100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)