Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_K12
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    55   1e-08
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    48   9e-07
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.1  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   7.1  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   9.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.4  

>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
 Frame = -2

Query: 524 EKFQKRLQKRERLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVD 345
           E  +K  Q ++ + G  ++      PYF Q  +  WW Y+ D + + ++  P  +T +  
Sbjct: 449 EDAEKYHQSKDVVLGDVETLPYAWAPYFTQHHKTAWWIYVVDPRQNRVIVPPFSITDIPK 508

Query: 344 T-HELQLRFTAPRWPGLYTLACCLRSDSYIGMDQQQDMKLDVKEAAAVPAEHPQWDLSDS 168
           T    ++ F  P   G ++    + S+SY+G D   ++ + VK+ + +  +  +  +SD 
Sbjct: 509 TLRTFRIPFQVPPVAGTFSFQLHIMSNSYVGEDVISNLTMIVKDTSVLQEQLQEEAVSDL 568

Query: 167 DTDNND 150
           + DN+D
Sbjct: 569 E-DNSD 573


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 48.4 bits (110), Expect = 9e-07
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
 Frame = -2

Query: 506  LQKRERLEGRSKSSHPVHCPYFPQEKQEYWWCYICDRKSHTLLTAPAHVTALVDTHELQL 327
            +Q    LE   +    V  PYFP +K E+WW  I D K+   L A   +T L  +   ++
Sbjct: 2075 VQLTRELEEDEEVDTTVIAPYFPAQKTEHWWLVISDDKT---LLAIKKIT-LGRSLTTKM 2130

Query: 326  RFTAPRWPGL-YTLACCLRSDSYIGMDQQQDMKLDVKE 216
             F  P    L Y L+C   SDSY+G+D +++ + +V E
Sbjct: 2131 EFVPPAMGTLKYKLSCF--SDSYMGVDYEKEFECNVLE 2166


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
 Frame = +1

Query: 325 RSCNSCVSTSAVTCAGAVSSVCDLRSQM*-----HHQYSCFSCGKYGQ-CTGCELFDRPS 486
           R  N+     +V     V +VCD+ S        + QY C  C KYG+ CT  E  +R  
Sbjct: 35  RRYNTNTIVGSVAYETLVDTVCDVSSNSTFVVKCNRQYPCTRCLKYGEACTYDERDNRKK 94

Query: 487 SRS 495
             S
Sbjct: 95  RHS 97


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = -2

Query: 530 QWEKFQKRLQKRERLEGRSKSSHP-VHCP---YFPQE 432
           +W+ +QKR++ ++ L   SK+ H  +  P   YFP++
Sbjct: 132 EWKAWQKRMRYKKNLTKISKNHHSIIRTPKKSYFPKD 168


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -2

Query: 266 SYIGMDQQQDMKLDVKEAAAVPAEHPQWDLSDSDTDNNDQG 144
           S + M Q  D+  +++    +P E    D  D  ++ ND G
Sbjct: 768 STVEMTQSTDVNDEIENTLTIPVEVEHSDNIDKGSEENDLG 808


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 382  SVCDLRSQM*HHQYSCFSCGKYGQCTGC 465
            S+CD R  +   +  C +CG    C+ C
Sbjct: 2557 SLCDSRFSLMEWRSQCRACGNSNVCSDC 2584


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,921
Number of Sequences: 5004
Number of extensions: 27170
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)