Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_K10
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo... 40 2e-04
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 29 0.44
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 29 0.58
SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces pombe... 29 0.58
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 26 4.1
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 7.2
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 25 9.5
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.5
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.5
>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 39.9 bits (89), Expect = 2e-04
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 5/155 (3%)
Frame = -3
Query: 527 MAVCVAVIGKDNSPLY---IGGIGN--DTSSDNELSRQWLVHTALDALEERLTTANPNNS 363
M A+IG ++P+Y +G I D S ++ L+ Q++VH++LD +++ T+N
Sbjct: 1 MTAYAAIIGTKDNPVYELEMGPINEKLDRSLNSHLN-QFIVHSSLDIVDQLQWTSNA--- 56
Query: 362 GTNTTTARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTA 183
Y+ + I YVT + ++ +L+ + S ++
Sbjct: 57 -------------FYMKTIDQFHEMYISAYVTPSNMRFMLLHQNQSADN-------IKLF 96
Query: 182 LRRLHALYADAICNPFHLPGDQITSPKFDKQVKXI 78
+ LH LY + +PF+ P I S FD +V+ I
Sbjct: 97 FQELHELYIKTLMSPFYQPNQPIRSQAFDLKVRSI 131
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 29.1 bits (62), Expect = 0.44
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 488 PLYIGGIGNDTSSDNELSRQWLVHTALDALEERLTTANPNNSGT 357
P Y + ++ S D R W+ L+ EE+ A P S T
Sbjct: 526 PAYFVNLADEPSQDRSEGRYWVTGRTLEQAEEKAKAAFPGKSFT 569
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 28.7 bits (61), Expect = 0.58
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 443 ELSRQWLVHTALDALEERLTTANPNNSGTNTTTARTDLRDL 321
+ SR W ++ LEE+L T P +T A LRDL
Sbjct: 390 DFSRPWRRINMIEYLEEKLNTKFPPGDQLHTPEANAFLRDL 430
>SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 28.7 bits (61), Expect = 0.58
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = -3
Query: 521 VCVAVIGKDNSPLYIGGIGNDTSSDNELSR-QWLVHTALDALEERLTTANPNNSGTNTTT 345
V +++ G + LY+ I D + L+R Q+L +LD + + + N G T+
Sbjct: 7 VFLSIAGPKDEQLYLEII--DPKEKHLLARYQYLGELSLDVINDLV------NDGERTSN 58
Query: 344 ARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSS 231
D +LGLL + Y + +NT++K +L +
Sbjct: 59 ------DCFLGLLGVEEDISTYAFYSNTKVKFILAVKA 90
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 164 LYADAICNP--FHLPGDQITSPKFDKQVKXIMLNNV 63
+YA+ + P FH S KFDK K + +N+V
Sbjct: 229 VYAEDVIEPKTFHYKNGISISMKFDKDQKKLFINDV 264
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 410 LDALEERLTTANPNNSGTNT 351
L+ L +RL+T NPNN+ +T
Sbjct: 67 LNQLCKRLSTGNPNNTNAST 86
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 488 PLYIGGIGNDTSSDNELSRQWLVHTALDALEERLTTANP 372
P+ + G +DT + N SR L ALDAL T NP
Sbjct: 213 PVLLDGSEDDTLTSNWHSRVILFQNALDALP--TTHGNP 249
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 470 IGNDTSSDNELSRQWLVHTALDALEERLTTANPNNSGTNTTTARTD 333
+GND + R+ + + EE LT+ N S NTT+ D
Sbjct: 34 LGNDRNLPFHREREKVESNPNSSDEEDLTSTNNTRSSDNTTSDTED 79
>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -1
Query: 184 RCAGCTLCTLTPYAIHSIYPVIK 116
+C+ C L ++ +HS++P+IK
Sbjct: 118 KCSTCGLFRVSRIDLHSVHPLIK 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,850
Number of Sequences: 5004
Number of extensions: 41407
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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