Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_K03
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 31 0.14
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 30 0.42
SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce... 28 1.7
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 3.0
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 27 3.9
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 27 3.9
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 26 5.2
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 26 6.9
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 25 9.1
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 31.5 bits (68), Expect = 0.14
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = -3
Query: 665 RRKKRNRLNQYLVNSVIACWHLLSFWSNFVHDEILCEGVLSWSKI*DFFPTNLAFFVKF 489
++ K+++ N + +NS+ A W + SF + L G+L+ +P A F +F
Sbjct: 761 KKSKKSKKNNHEINSLTALWFIHSFVRTMIEIICLLIGILASMICGAAYPVQAAVFARF 819
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 29.9 bits (64), Expect = 0.42
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 563 LCEGVLSWSKI*DFFPTNLAFFVKFSL*NDA*QSSNIFYLE*DLPT 426
L + VL+W I FFP L S+ N + S N + E D+PT
Sbjct: 563 LADAVLNWQSILSFFPA-LRIMRFLSITNKSLSSDNSAFTENDIPT 607
>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 122
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = -3
Query: 191 TRYDITKNSTVFKVNNRCSSNTALKWKIVVPI*GERNKT---KKRVRNHEQSQR 39
TR DI + TV +NR ++ A K K +P+ + KT ++ + +EQS++
Sbjct: 49 TRKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRK 102
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 105 NYFPL*CGVGAT---SIIYFKYSAVFSYIISSAYCLFHNGQNIECEFVFRSQLKCYRRLT 275
N FP+ +G+T + + KY + Y + +A C++ N + E FV + +
Sbjct: 256 NDFPIAIEIGSTYNVAYVVTKYGFIHVYDLETAKCIYMNRVSGESIFVTTAHKSVNGLMA 315
Query: 276 VNR 284
+NR
Sbjct: 316 INR 318
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 103 CPFKENEIKPKKEFGTMNKANVQETFLTECTLS 5
CP+ + ++ K FGT+ N + L +CT S
Sbjct: 454 CPYLKPKLVISKSFGTLIVKNHNQLSLLKCTFS 486
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.6 bits (56), Expect = 3.9
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +2
Query: 545 IIRLRKGSH--RERSLTKNSTNANKQSPN*LDIGSVDFSFFFFLNSNYHFVAPVFIRXNT 718
I+ + SH R + LTK N N+ SP S F+ N +FV ++
Sbjct: 673 ILEFQSFSHISRIQFLTKIWDNLNRFSPK------EKTSTFYLSNHLVNFVTETIVQ--- 723
Query: 719 NRNPRRELNTIPYVFQKC 772
PRR N + Y Q C
Sbjct: 724 EEEPRRRTNVLAYFIQVC 741
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 280 IEFIQNTRI*ARKSVKKGRDIMED-ESKPKKNKFDQKS 390
+E +QN +K +KKG+ +D E KPKK K + S
Sbjct: 209 VEELQNKGKEKQKELKKGKREKKDEEEKPKKKKQKKSS 246
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 451 KILLDCYASFQRENLTKKAKFV 516
++LL CYA + +NL ++A +V
Sbjct: 59 RLLLQCYAPLEGDNLKERALYV 80
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 395 YADSSLTIAVLSGDLTLNRKYYLIVMRHFREKI 493
Y D + I V SGD K + +FREK+
Sbjct: 259 YGDDGVAIGVRSGDQVAKAKQIIGDPSYFREKV 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,546
Number of Sequences: 5004
Number of extensions: 62492
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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