Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_K03
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0268 + 21942591-21942690,21942821-21942904,21943116-219431...    28   7.2  

>09_06_0268 +
           21942591-21942690,21942821-21942904,21943116-21943192,
           21943266-21943336,21943646-21943717,21943894-21943965,
           21944057-21944122,21944411-21944476,21944553-21944770,
           21944983-21945254,21945513-21945778,21945879-21945999,
           21946094-21946230,21946362-21946518,21947055-21947189
          Length = 637

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +2

Query: 248 SIKMLQKTYGESNLFKTRAYEPEKALKKAEI*WKMNQNRKKTNSIKSQTYADSSLTIAVL 427
           ++ M    +  S   KT    P K++   E   K+N +R+ T+ I    ++ S L  A  
Sbjct: 282 AVNMKSLEHSPSMGCKTPPAVPRKSMSDNEFENKLNHSRRSTDPISLMNHSSSDLQAA-- 339

Query: 428 SGDLTLNRK 454
           +G+ + NR+
Sbjct: 340 TGNFSSNRQ 348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,774,457
Number of Sequences: 37544
Number of extensions: 323817
Number of successful extensions: 674
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)