Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_J17
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0015 + 11813465-11813479,11814342-11814422,11814842-118149...    30   1.6  
09_02_0412 - 8731559-8731651,8731729-8731762,8732250-8732501,873...    29   3.8  

>10_07_0015 +
           11813465-11813479,11814342-11814422,11814842-11814951,
           11815553-11815608,11816086-11816180,11817021-11817126,
           11817261-11817577,11817666-11817848,11817976-11818173,
           11819029-11819346,11819721-11819813
          Length = 523

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 422 NQTCSTLNTSNHDAYLRS-RR*DTVDSG*SRRKLFR 526
           N  CST +TS+HD++ R  RR  +  SG  RRK +R
Sbjct: 188 NGNCSTSDTSHHDSWSRRLRRVRSSASGQRRRKRWR 223


>09_02_0412 -
           8731559-8731651,8731729-8731762,8732250-8732501,
           8732585-8733996
          Length = 596

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 367 LPLLERDGAFHSISITNVKCSMFENFLYSD 278
           LP LER  +F+   ITNV+C +  NF++ +
Sbjct: 567 LPRLERRTSFNDTGITNVQCDLC-NFIHHE 595


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,713,858
Number of Sequences: 37544
Number of extensions: 251205
Number of successful extensions: 500
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)