Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_J16
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.5  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   5.9  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   7.8  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   7.8  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    25   7.8  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 66   CAQF--HIXXRFINPSFPRYIKHAFNLKCNSIHXPTKCFFFLFNK 194
            C+QF  H     INP  P      F L+ ++       FFFLF K
Sbjct: 3347 CSQFPFHQYIELINPCLPLVEGLLFELERSNNENYYNSFFFLFEK 3391


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +1

Query: 361  SHQNAKLSWNILNLTCTNTQCMLRLIH-QYIHINIYPRHSILHFSRYF---YNPVSTIP 525
            SH   KL W+  N +CT T  ML L    +  + ++ R+  +H+S  F   +N  S IP
Sbjct: 991  SHYRKKL-WDFYNFSCTITILMLLLAPLDFPVLIVWARNLSMHWSIPFPTHHNFFSIIP 1048


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 358 ISHQNAKLSWNILN---LTCTNTQCMLRLIHQYIHINI 462
           ++H+ A    +IL+   L C   +C+L +IH   H+ I
Sbjct: 141 LNHKLANYGLSILSIHALMCVECECLLNVIHTAQHMQI 178


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 358 ISHQNAKLSWNILN---LTCTNTQCMLRLIHQYIHINI 462
           ++H+ A    +IL+   L C   +C+L +IH   H+ I
Sbjct: 141 LNHKLANYGLSILSIHALMCVECECLLNVIHTAQHMQI 178


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 173 TFCRXVYRVTLEIECMFDVTWKRWINET 90
           +FC  V R   E    F +TW  W+N+T
Sbjct: 82  SFCTYVGRYVDEA-LSFSLTWNYWLNDT 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,799
Number of Sequences: 5004
Number of extensions: 51935
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)